Protein Domain : IPR013025

Type:  Family Name:  Ribosomal protein L25/L23
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].This entry represents both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins. Short Name:  Ribosomal_L25/23

1 Child Features

DB identifier Type Name
IPR019985 Family Ribosomal protein L23

3 Contains

DB identifier Type Name
IPR012677 Domain Nucleotide-binding alpha-beta plait domain
IPR012678 Domain Ribosomal protein L23/L15e core domain
IPR001014 Conserved_site Ribosomal protein L23/L25, conserved site

3 Cross Referencess

Identifier
PF00276
MF_01369_A
MF_01369_B

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003735 IPR013025
GO:0006412 IPR013025
GO:0005840 IPR013025

3 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR013025
GO:0006412 IPR013025
GO:0005840 IPR013025

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
137703 C7B2I8 PAC:15422100 Selaginella moellendorffii 94  
27386 D8RMR7 PAC:15404198 Selaginella moellendorffii 99  
406348 D8R232 PAC:15415341 Selaginella moellendorffii 169  
271663 D8SKB2 PAC:15402421 Selaginella moellendorffii 150  
evm.model.supercontig_1.344 PAC:16404282 Carica papaya 153  
evm.model.supercontig_252.20 PAC:16414942 Carica papaya 154  
evm.model.supercontig_974.3 PAC:16429155 Carica papaya 199  
29788.m000329 B9SYP0 PAC:16808539 Ricinus communis 152  
28281.m000371 B9SZ40 PAC:16800477 Ricinus communis 174  
28180.m000383 B9T152 PAC:16800242 Ricinus communis 164  
Cucsa.165510.1 PAC:16966029 Cucumis sativus 153  
Cucsa.165510.2 PAC:16966030 Cucumis sativus 153  
Cucsa.168020.1 A0A0A0KNR3 PAC:16966303 Cucumis sativus 153  
Cucsa.168020.2 A0A0A0KNR3 PAC:16966304 Cucumis sativus 153  
Cucsa.229240.1 A0A0A0KQU4 PAC:16970110 Cucumis sativus 152  
Cucsa.229240.5 PAC:16970114 Cucumis sativus 128  
Cucsa.229240.2 A0A0A0KQU4 PAC:16970111 Cucumis sativus 152  
Cucsa.229240.3 PAC:16970112 Cucumis sativus 146  
Cucsa.229240.4 PAC:16970113 Cucumis sativus 131  
Cucsa.273070.1 A0A0A0L0J2 PAC:16973767 Cucumis sativus 174  
orange1.1g048067m A0A067DGN4 PAC:18115653 Citrus sinensis 75  
orange1.1g031766m A0A067FK20 PAC:18095314 Citrus sinensis 153  
orange1.1g031733m A0A067FK20 PAC:18095315 Citrus sinensis 153  
orange1.1g031794m A0A067FK20 PAC:18095316 Citrus sinensis 153  
orange1.1g030915m A0A067EZB1 PAC:18128343 Citrus sinensis 169  
orange1.1g031815m A0A067GBT9 PAC:18097382 Citrus sinensis 152  
orange1.1g030945m A0A067GC57 PAC:18097381 Citrus sinensis 168  
AT4G39880.1 Q9SMR5 PAC:19648275 Arabidopsis thaliana 178  
ATCG00840.1 P61845 PAC:19638005 Arabidopsis thaliana 93  
ATCG01300.1 P61845 PAC:19638027 Arabidopsis thaliana 93  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498