Protein Domain : IPR001147

Type:  Family Name:  Ribosomal protein L21e
Description:  Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ].The L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include mammalian L2, Entamoeba histolyticaL21, Caenorhabditis elegansL21 (C14B9.7), Saccharomyces cerevisiae(Baker's yeast) L21E (URP1) and Haloarcula marismortuiHL31. Short Name:  Ribosomal_L21e

1 Child Features

DB identifier Type Name
IPR022856 Family Ribosomal protein L21e, archaeal

2 Contains

DB identifier Type Name
IPR008991 Domain Translation protein SH3-like domain
IPR018259 Conserved_site Ribosomal protein L21e, conserved site

3 Cross Referencess

Identifier
PTHR20981
PF01157
G3DSA:2.30.30.70

0 Found In

4 GO Annotations

GO Term Gene Name
GO:0003735 IPR001147
GO:0006412 IPR001147
GO:0005622 IPR001147
GO:0005840 IPR001147

4 Ontology Annotations

GO Term Gene Name
GO:0003735 IPR001147
GO:0006412 IPR001147
GO:0005622 IPR001147
GO:0005840 IPR001147

0 Parent Features

889 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
170832 D8RES0 PAC:15409024 Selaginella moellendorffii 160  
evm.model.supercontig_113.11 PAC:16406019 Carica papaya 92  
evm.model.supercontig_113.10 PAC:16406018 Carica papaya 164  
evm.model.supercontig_202.1 PAC:16413184 Carica papaya 100  
29889.m003346 B9RZV5 PAC:16812292 Ricinus communis 524  
27574.m000227 B9SYV4 PAC:16798739 Ricinus communis 164  
Cucsa.390030.1 PAC:16982915 Cucumis sativus 99  
Cucsa.144020.1 PAC:16963859 Cucumis sativus 66  
Cucsa.356250.1 PAC:16980278 Cucumis sativus 60  
Cucsa.020140.1 PAC:16951891 Cucumis sativus 56  
Cucsa.074650.1 PAC:16955677 Cucumis sativus 118  
Cucsa.187480.1 PAC:16967804 Cucumis sativus 133  
Cucsa.242460.1 A0A0A0LEZ0 PAC:16971172 Cucumis sativus 164  
Cucsa.248310.1 PAC:16971464 Cucumis sativus 86  
Cucsa.295160.1 PAC:16975389 Cucumis sativus 142  
orange1.1g047565m A0A067D4M8 PAC:18115860 Citrus sinensis 106  
orange1.1g031165m A0A067G5K5 PAC:18118091 Citrus sinensis 164  
AT1G09690.1 Q43291 PAC:19652733 Arabidopsis thaliana 164  
AT1G09590.1 Q43291 PAC:19656292 Arabidopsis thaliana 164  
AT1G57860.1 Q9FDZ9 PAC:19650592 Arabidopsis thaliana 164  
AT1G57660.1 Q9FDZ9 PAC:19650764 Arabidopsis thaliana 164  
Thhalv10008951m PAC:20185927 Eutrema salsugineum 164  
Thhalv10008955m PAC:20187817 Eutrema salsugineum 164  
Thhalv10023727m PAC:20201035 Eutrema salsugineum 164  
Thhalv10023728m PAC:20201027 Eutrema salsugineum 164  
Ciclev10012788m V4T124 PAC:20797116 Citrus clementina 206  
Lus10017232 PAC:23165804 Linum usitatissimum 164  
Lus10021079 PAC:23182377 Linum usitatissimum 164  
Lus10029302 PAC:23139786 Linum usitatissimum 164  
Lus10030882 PAC:23155299 Linum usitatissimum 165  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11297922
            11290319
            11114498