Protein Domain : IPR005087

Type:  Domain Name:  Carbohydrate binding module family 11
Description:  A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins.CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology.Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see [].This entry represents , which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans. Short Name:  CBM_fam11

0 Child Features

0 Contains

1 Cross References

Identifier
PF03425

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0008810 IPR005087
GO:0030245 IPR005087

2 Ontology Annotations

GO Term Gene Name
GO:0008810 IPR005087
GO:0030245 IPR005087

1 Parent Features

DB identifier Type Name
IPR008979 Domain Galactose-binding domain-like

30 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
170011 D8RBS4 PAC:15402817 Selaginella moellendorffii 483  
Potri.004G061200.8 PAC:26992631 Populus trichocarpa 347  
Traes_2AS_6BDE6EB3F.1 PAC:31814975 Triticum aestivum 477  
Traes_2AS_6BDE6EB3F.2 PAC:31814976 Triticum aestivum 384  
Traes_2DS_66A3A96F0.2 PAC:31957176 Triticum aestivum 493  
Sevir.1G024400.1.p A0A4U6W3M2 PAC:32667221 Setaria viridis 590  
Mapoly0037s0097.1.p A0A2R6X4B0 PAC:33008360 Marchantia polymorpha 601  
Mapoly0037s0097.2.p A0A2R6X4B0 PAC:33008361 Marchantia polymorpha 601  
Oropetium_20150105_18999A PAC:35993507 Oropetium thomaeum 588  
Cz05g21060.t1 PAC:38242063 Chromochloris zofingiensis 223  
Cz05g03280.t1 PAC:38242601 Chromochloris zofingiensis 651  
HORVU2Hr1G022680.4 PAC:38346882 Hordeum vulgare 187  
HORVU2Hr1G022680.7 PAC:38346883 Hordeum vulgare 187  
HORVU2Hr1G022680.6 PAC:38346880 Hordeum vulgare 209  
HORVU2Hr1G022680.1 PAC:38346878 Hordeum vulgare 255  
HORVU2Hr1G022680.8 PAC:38346879 Hordeum vulgare 255  
HORVU2Hr1G022680.9 PAC:38346877 Hordeum vulgare 360  
HORVU2Hr1G022680.10 PAC:38346875 Hordeum vulgare 387  
HORVU2Hr1G022680.2 PAC:38346876 Hordeum vulgare 360  
SbRio.04G111600.1.p PAC:39010180 Sorghum bicolor Rio 473  
evm.model.AsparagusV1_Unassigned.1058 A0A1R3L5F0 PAC:40550587 Asparagus officinalis 591  
evm.model.AsparagusV1_01.1777 A0A5P1FRX7 PAC:40544150 Asparagus officinalis 614  
Sevir.1G024400.1.p A0A4U6W3M2 PAC:40608925 Setaria viridis 590  
Thint.06G0107700.3.p PAC:40780674 Thinopyrum intermedium 435  
Sphmag12G024600.1.p PAC:41930548 Sphagnum magellanicum 627  
CepurR40.1G037900.1.p PAC:43009198 Ceratodon purpureus R40 737  
CepurGG1.1G036100.1.p PAC:43032319 Ceratodon purpureus GG1 737  
ELECO.r07.2AG0107290.1 PAC:44181258 Eleusine coracana 590  
ELECO.r07.2BG0160930.1 PAC:44191487 Eleusine coracana 589  
Clevi.0007s0985.2.p PAC:45701394 Cleome violacea 478  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            3338453
            3134347
            15214846