Protein Domain : IPR006084

Type:  Family Name:  XPG/Rad2 endonuclease
Description:  Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair [, ]. XP-G can be corrected by a 133 Kd nuclear protein, XPGC []. XPGC is an acidic protein that confers normal UV resistance in expressing cells []. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms [, ]. XPGC cleaves one strand of the duplex at the border with the single-stranded region [].XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae(Baker's yeast) and rad13 from Schizosaccharomyces pombe(Fission yeast), which are single-stranded DNA endonucleases [, ]; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. Short Name:  XPG/Rad2

2 Child Features

DB identifier Type Name
IPR001044 Family XPG/Rad2 endonuclease, eukaryotes
IPR023426 Family Flap structure-specific endonuclease

5 Contains

DB identifier Type Name
IPR006085 Domain XPG N-terminal
IPR020045 Domain 5'-3' exonuclease, C-terminal domain
IPR006086 Domain XPG-I domain
IPR008918 Conserved_site Helix-hairpin-helix motif, class 2
IPR019974 Conserved_site XPG conserved site

2 Cross Referencess

Identifier
PTHR11081
PR00853

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0004518 IPR006084
GO:0006281 IPR006084

2 Ontology Annotations

GO Term Gene Name
GO:0004518 IPR006084
GO:0006281 IPR006084

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
175620 D8RZD7 PAC:15422004 Selaginella moellendorffii 401  
111465 D8S952 PAC:15410492 Selaginella moellendorffii 377  
85061 D8R3Y1 PAC:15416989 Selaginella moellendorffii 552  
73710 D8QQY4 PAC:15409158 Selaginella moellendorffii 116  
410274 D8RE83 PAC:15404112 Selaginella moellendorffii 454  
evm.model.supercontig_107.42 PAC:16405346 Carica papaya 564  
evm.model.supercontig_140.35 PAC:16408880 Carica papaya 333  
evm.model.supercontig_140.34 PAC:16408879 Carica papaya 868  
evm.model.supercontig_17.163 PAC:16410659 Carica papaya 275  
evm.model.supercontig_3.434 PAC:16416740 Carica papaya 340  
evm.model.supercontig_48.229 PAC:16420872 Carica papaya 435  
evm.model.supercontig_57.89 PAC:16422915 Carica papaya 291  
29822.m003372 B9RUC5 PAC:16809742 Ricinus communis 1641  
30026.m001514 B9S8I1 PAC:16815899 Ricinus communis 629  
30128.m008993 B9RFS3 PAC:16818577 Ricinus communis 345  
30147.m013758 B9R9D0 PAC:16819775 Ricinus communis 586  
30174.m008956 B9RDJ8 PAC:16822599 Ricinus communis 609  
29654.m000301 B9SU84 PAC:16804917 Ricinus communis 576  
Cucsa.339510.1 PAC:16978892 Cucumis sativus 1462  
Cucsa.363110.1 A0A0A0KEK8 PAC:16981027 Cucumis sativus 606  
Cucsa.363110.2 PAC:16981028 Cucumis sativus 418  
Cucsa.051080.1 PAC:16954174 Cucumis sativus 382  
Cucsa.107680.1 PAC:16959614 Cucumis sativus 563  
Cucsa.107690.2 PAC:16959615 Cucumis sativus 503  
Cucsa.107700.3 PAC:16959616 Cucumis sativus 428  
Cucsa.107710.4 PAC:16959617 Cucumis sativus 368  
Cucsa.121820.1 A0A0A0LVU6 PAC:16961355 Cucumis sativus 577  
Cucsa.121820.2 PAC:16961356 Cucumis sativus 534  
Cucsa.212640.1 PAC:16969372 Cucumis sativus 556  
orange1.1g005869m A0A067GEE9 PAC:18112182 Citrus sinensis 672  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            8160271
            8206890
            8247134
            8090225
            8464724