Protein Domain : IPR005762

Type:  Family Name:  UDP-N-acetylmuramoylalanine-D-glutamate ligase
Description:  The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:(1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc).(2) addition of a short polypeptide chain to the UDPMurNAc.(3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.Stage two involves four key Mur ligase enzymes: MurC () [], MurD () [], MurE () [] and MurF () []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. Short Name:  UDP-N-AcMur-Glu_ligase

0 Child Features

3 Contains

DB identifier Type Name
IPR016040 Domain NAD(P)-binding domain
IPR004101 Domain Mur ligase, C-terminal
IPR013221 Domain Mur ligase, central

2 Cross Referencess

Identifier
TIGR01087
MF_00639

0 Found In

5 GO Annotations

GO Term Gene Name
GO:0005524 IPR005762
GO:0008764 IPR005762
GO:0008360 IPR005762
GO:0051301 IPR005762
GO:0005737 IPR005762

5 Ontology Annotations

GO Term Gene Name
GO:0005524 IPR005762
GO:0008764 IPR005762
GO:0008360 IPR005762
GO:0051301 IPR005762
GO:0005737 IPR005762

0 Parent Features

91 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
119501 D8SKZ9 PAC:15412162 Selaginella moellendorffii 492  
229823 D8QPH8 PAC:15413718 Selaginella moellendorffii 492  
orange1.1g015421m A0A067EQ86 PAC:18128004 Citrus sinensis 407  
orange1.1g015701m PAC:18128005 Citrus sinensis 402  
Ciclev10004787m V4S358 PAC:20789825 Citrus clementina 509  
Gorai.002G037200.1 A0A0D2M6C6 PAC:26791631 Gossypium raimondii 509  
Gorai.002G037200.2 A0A0D2Q7G8 PAC:26791632 Gossypium raimondii 459  
Thecc1EG024835t1 A0A061EWE2 PAC:27421706 Theobroma cacao 509  
Thecc1EG024835t2 A0A061EX76 PAC:27421707 Theobroma cacao 376  
Migut.J01799.1.p PAC:28941174 Mimulus guttatus 464  
Araha.11756s0423.1.p PAC:28856566 Arabidopsis halleri 384  
Prupe.7G070400.1.p M5W8J2 PAC:32104224 Prunus persica 514  
GSMUA_AchrUn_randomP11420_001 PAC:32296655 Musa acuminata 341  
Sphfalx0158s0005.1.p PAC:32622093 Sphagnum fallax 562  
Sphfalx0158s0005.2.p PAC:32622094 Sphagnum fallax 562  
Pp3c10_15450V3.3.p PAC:32901558 Physcomitrium patens 494  
Pp3c10_15450V3.2.p Q3LHF6 PAC:32901557 Physcomitrium patens 521  
Pp3c10_15450V3.1.p Q3LHF6 PAC:32901556 Physcomitrium patens 521  
Mapoly0099s0027.1.p A0A2R6WEW9 PAC:33024988 Marchantia polymorpha 561  
Aco015657.1 PAC:33052593 Ananas comosus 517  
Aqcoe1G033900.1.p A0A2G5ED13 PAC:33077997 Aquilegia coerulea 454  
Zosma3816g00020.1 A0A0K9P549 PAC:33177523 Zostera marina 659  
Brdisv1pangenome1011225m.p PAC:33635564 Brachypodium distachyon Pangenome 429  
Brdisv1BdTR11A1048101m.p PAC:35692123 Brachypodium distachyon BdTR11a 326  
Brdisv1BdTR11A1041126m.p PAC:35694724 Brachypodium distachyon BdTR11a 429  
Solyc05g012800.1.1 PAC:36144247 Solanum lycopersicum 497  
PGSC0003DMP400049389 PAC:37442738 Solanum tuberosum 497  
VIT_208s0007g07850.1 PAC:38024312 Vitis vinifera 479  
Gohir.A01G040200.1.p PAC:38148069 Gossypium hirsutum 402  
Gohir.D01G027900.1.p PAC:38143822 Gossypium hirsutum 509  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            17139082
            17427948
            16595662
            16322581
            16934839