Protein Domain : IPR008909

Type:  Domain Name:  DALR anticodon binding
Description:  Aminoacyl-tRNA synthetase (aaRS) is a key enzyme during protein biosynthesis. Each aaRS contains a catalytic central domain (CCD), responsible for activating amino acid, and an anticodon-binding domain (ABD), necessary for binding the anticodon in cognate tRNA. aaRSs are classified into class I and II (aaRS-I and aaRS-II) based on the topologies of CCDs. Whereas the structure of the CCDs is similar among the members of each of the two different aaRS classes, the ABDs are diverse in structure [].The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases. Both classes of tRNA synthetases have been subdivided into three subclasses, designated Ia, Ib, Ic and IIa, IIb, IIc.This all alpha helical domain is the anticodon binding domain (ABD) of arginyl tRNA synthetase, and also matches the ABD of some glycine tRNA synthetases. This domain is known as the DALR domain after characteristic conserved amino acids []. Short Name:  DALR_anticod-bd

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF05746
SM00836

3 Found Ins

DB identifier Type Name
IPR001278 Family Arginine-tRNA ligase
IPR009080 Domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
IPR015944 Family Glycine-tRNA ligase, beta subunit

3 GO Annotations

GO Term Gene Name
GO:0004814 IPR008909
GO:0005524 IPR008909
GO:0006420 IPR008909

3 Ontology Annotations

GO Term Gene Name
GO:0004814 IPR008909
GO:0005524 IPR008909
GO:0006420 IPR008909

1 Parent Features

DB identifier Type Name
IPR009080 Domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
421269 D8SEP7 PAC:15414407 Selaginella moellendorffii 855  
140217 D8QP34 PAC:15405073 Selaginella moellendorffii 595  
76727 D8QSZ8 PAC:15417941 Selaginella moellendorffii 578  
evm.model.supercontig_78.29 PAC:16426204 Carica papaya 231  
29912.m005422 B9RKG2 PAC:16813299 Ricinus communis 592  
29679.m000382 B9SYA5 PAC:16805485 Ricinus communis 615  
Cucsa.288730.2 A0A0A0LYR4 PAC:16975119 Cucumis sativus 590  
Cucsa.288730.3 A0A0A0LYR4 PAC:16975120 Cucumis sativus 590  
Cucsa.288730.1 PAC:16975118 Cucumis sativus 645  
orange1.1g007251m A0A067FGT8 PAC:18116539 Citrus sinensis 611  
orange1.1g008744m A0A067FTR9 PAC:18116541 Citrus sinensis 555  
orange1.1g008743m A0A067FTR9 PAC:18116540 Citrus sinensis 555  
orange1.1g010356m A0A067FKE9 PAC:18116543 Citrus sinensis 512  
AT4G26300.1 O23247 PAC:19646553 Arabidopsis thaliana 642  
AT1G66530.1 Q9C713 PAC:19656771 Arabidopsis thaliana 590  
Thhalv10024748m V4LVI4 PAC:20194989 Eutrema salsugineum 590  
Thhalv10024637m V4P599 PAC:20194988 Eutrema salsugineum 652  
Thhalv10024747m V4LVI4 PAC:20194990 Eutrema salsugineum 590  
Thhalv10027313m V4P586 PAC:20193280 Eutrema salsugineum 308  
Thhalv10029198m V4N0T8 PAC:20197854 Eutrema salsugineum 494  
Ciclev10007707m V4UJY5 PAC:20793141 Citrus clementina 645  
Ciclev10007820m V4TVI3 PAC:20793143 Citrus clementina 589  
Ciclev10007814m V4TVI3 PAC:20793144 Citrus clementina 589  
Ciclev10007813m V4TVI3 PAC:20793142 Citrus clementina 589  
Ciclev10007924m V4UQ25 PAC:20793146 Citrus clementina 546  
Lus10034982 PAC:23181395 Linum usitatissimum 679  
Lus10012940 PAC:23158578 Linum usitatissimum 643  
Potri.002G198500.2 B9GSG1 PAC:27023898 Populus trichocarpa 590  
Potri.002G198500.1 A0A2K2BLL0 PAC:27023897 Populus trichocarpa 644  
Gorai.002G067400.1 A0A0D2NJ31 PAC:26792302 Gossypium raimondii 157  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            10447505
            15733854