Gene : Pp3c12_2390 P. patens v3.3
Defline:  (1 of 19) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  70
Name:  ? Pp3c12_2390 Secondary Identifier:  ? PAC:32974749
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_2390 0.5kb upstream 0.5kb upstream 6529 true Chr12: 1989084-1995612 Physcomitrium patens
Pp3c12_2390 0.5kb upstream 0.5kb upstream 500 false Chr12: 1989084-1989583 Physcomitrium patens
Pp3c12_2390 0.5kb downstream 0.5kb downstream 6529 true Chr12: 1989584-1996112 Physcomitrium patens
Pp3c12_2390 0.5kb downstream 0.5kb downstream 500 false Chr12: 1995613-1996112 Physcomitrium patens
Pp3c12_2390 1.0kb upstream 1.0kb upstream 7029 true Chr12: 1988584-1995612 Physcomitrium patens
Pp3c12_2390 1.0kb upstream 1.0kb upstream 1000 false Chr12: 1988584-1989583 Physcomitrium patens
Pp3c12_2390 1.0kb downstream 1.0kb downstream 7029 true Chr12: 1989584-1996612 Physcomitrium patens
Pp3c12_2390 1.0kb downstream 1.0kb downstream 1000 false Chr12: 1995613-1996612 Physcomitrium patens
Pp3c12_2390 2.0kb upstream 2.0kb upstream 8029 true Chr12: 1987584-1995612 Physcomitrium patens
Pp3c12_2390 2.0kb upstream 2.0kb upstream 2000 false Chr12: 1987584-1989583 Physcomitrium patens
Pp3c12_2390 2.0kb downstream 2.0kb downstream 8029 true Chr12: 1989584-1997612 Physcomitrium patens
Pp3c12_2390 2.0kb downstream 2.0kb downstream 2000 false Chr12: 1995613-1997612 Physcomitrium patens
Pp3c12_2390 5.0kb upstream 5.0kb upstream 11029 true Chr12: 1984584-1995612 Physcomitrium patens
Pp3c12_2390 5.0kb upstream 5.0kb upstream 5000 false Chr12: 1984584-1989583 Physcomitrium patens
Pp3c12_2390 5.0kb downstream 5.0kb downstream 11029 true Chr12: 1989584-2000612 Physcomitrium patens
Pp3c12_2390 5.0kb downstream 5.0kb downstream 5000 false Chr12: 1995613-2000612 Physcomitrium patens
Pp3c12_2390 10.0kb upstream 10.0kb upstream 16029 true Chr12: 1979584-1995612 Physcomitrium patens
Pp3c12_2390 10.0kb upstream 10.0kb upstream 10000 false Chr12: 1979584-1989583 Physcomitrium patens
Pp3c12_2390 10.0kb downstream 10.0kb downstream 16029 true Chr12: 1989584-2005612 Physcomitrium patens
Pp3c12_2390 10.0kb downstream 10.0kb downstream 10000 false Chr12: 1995613-2005612 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429046 5275 Viridiplantae View MSA
121351271 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.165        
cufflinks 1.509        
cufflinks 3.965       High
cufflinks 1.016        
cufflinks 2.133       High
cufflinks 1.409        
cufflinks 0.439        
cufflinks 1.567        
cufflinks 0.53        
cufflinks 0.938        
cufflinks 1.56        
cufflinks 0.897        
cufflinks 2.198       High
cufflinks 0.298       Low
cufflinks 1.251        
cufflinks 2.583       High
cufflinks 0.75        
cufflinks 0.558        
cufflinks 0.303       Low
cufflinks 0.404       Low
cufflinks 0.612        
cufflinks 0.856        
cufflinks 1.574        
cufflinks 0.712        
cufflinks 1.8        
cufflinks 0.943        
cufflinks 0.171       Low
cufflinks 0.183       Low
cufflinks 1.197        
cufflinks 0.65        

0 Strain