Gene : Pp3c10_13640 P. patens v3.3
Defline:  (1 of 3) PTHR31818:SF0 - PROTEIN ROOT HAIR SPECIFIC 17 Genomic Order:  656
Name:  ? Pp3c10_13640 Secondary Identifier:  ? PAC:32901788
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c10_13640 0.5kb upstream 0.5kb upstream 8963 true Chr10: 9202698-9211660 Physcomitrium patens
Pp3c10_13640 0.5kb upstream 0.5kb upstream 500 false Chr10: 9211161-9211660 Physcomitrium patens
Pp3c10_13640 0.5kb downstream 0.5kb downstream 8963 true Chr10: 9202198-9211160 Physcomitrium patens
Pp3c10_13640 0.5kb downstream 0.5kb downstream 500 false Chr10: 9202198-9202697 Physcomitrium patens
Pp3c10_13640 1.0kb upstream 1.0kb upstream 9463 true Chr10: 9202698-9212160 Physcomitrium patens
Pp3c10_13640 1.0kb upstream 1.0kb upstream 1000 false Chr10: 9211161-9212160 Physcomitrium patens
Pp3c10_13640 1.0kb downstream 1.0kb downstream 9463 true Chr10: 9201698-9211160 Physcomitrium patens
Pp3c10_13640 1.0kb downstream 1.0kb downstream 1000 false Chr10: 9201698-9202697 Physcomitrium patens
Pp3c10_13640 2.0kb upstream 2.0kb upstream 10463 true Chr10: 9202698-9213160 Physcomitrium patens
Pp3c10_13640 2.0kb upstream 2.0kb upstream 2000 false Chr10: 9211161-9213160 Physcomitrium patens
Pp3c10_13640 2.0kb downstream 2.0kb downstream 10463 true Chr10: 9200698-9211160 Physcomitrium patens
Pp3c10_13640 2.0kb downstream 2.0kb downstream 2000 false Chr10: 9200698-9202697 Physcomitrium patens
Pp3c10_13640 5.0kb upstream 5.0kb upstream 13463 true Chr10: 9202698-9216160 Physcomitrium patens
Pp3c10_13640 5.0kb upstream 5.0kb upstream 5000 false Chr10: 9211161-9216160 Physcomitrium patens
Pp3c10_13640 5.0kb downstream 5.0kb downstream 13463 true Chr10: 9197698-9211160 Physcomitrium patens
Pp3c10_13640 5.0kb downstream 5.0kb downstream 5000 false Chr10: 9197698-9202697 Physcomitrium patens
Pp3c10_13640 10.0kb upstream 10.0kb upstream 18463 true Chr10: 9202698-9221160 Physcomitrium patens
Pp3c10_13640 10.0kb upstream 10.0kb upstream 10000 false Chr10: 9211161-9221160 Physcomitrium patens
Pp3c10_13640 10.0kb downstream 10.0kb downstream 18463 true Chr10: 9192698-9211160 Physcomitrium patens
Pp3c10_13640 10.0kb downstream 10.0kb downstream 10000 false Chr10: 9192698-9202697 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351213 5274 Embryophyte View MSA
123382056 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.771        
cufflinks 1.024        
cufflinks 0.806        
cufflinks 1.493       High
cufflinks 1.403       High
cufflinks 0.912        
cufflinks 1.687       High
cufflinks 0.6        
cufflinks 0.327       Low
cufflinks 0.15       Low
cufflinks 0.565        
cufflinks 1.049        
cufflinks 0.933        
cufflinks 0.558        
cufflinks 1.139        
cufflinks 0.627        
cufflinks 1.438       High
cufflinks 0.415        
cufflinks 1.585       High
cufflinks 0.599        
cufflinks 0.701        
cufflinks 0.535        
cufflinks 1.103        
cufflinks 1.882       High
cufflinks 0.722        
cufflinks 0.148       Low
cufflinks 0.709        
cufflinks 0.367       Low
cufflinks 0.445        
cufflinks 0.428        

0 Strain