Gene : Pp3c8_14160 P. patens v3.3
Defline:  (1 of 1) PTHR13930 - RSAFD1-RELATED Genomic Order:  602
Name:  ? Pp3c8_14160 Secondary Identifier:  ? PAC:32963398
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-7283 Physcomitrium patens pathologic  
Ppatens PWY-7286 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c8_14160 0.5kb upstream 0.5kb upstream 5845 true Chr08: 9213907-9219751 Physcomitrium patens
Pp3c8_14160 0.5kb upstream 0.5kb upstream 500 false Chr08: 9219252-9219751 Physcomitrium patens
Pp3c8_14160 0.5kb downstream 0.5kb downstream 5845 true Chr08: 9213407-9219251 Physcomitrium patens
Pp3c8_14160 0.5kb downstream 0.5kb downstream 500 false Chr08: 9213407-9213906 Physcomitrium patens
Pp3c8_14160 1.0kb upstream 1.0kb upstream 6345 true Chr08: 9213907-9220251 Physcomitrium patens
Pp3c8_14160 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9219252-9220251 Physcomitrium patens
Pp3c8_14160 1.0kb downstream 1.0kb downstream 6345 true Chr08: 9212907-9219251 Physcomitrium patens
Pp3c8_14160 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9212907-9213906 Physcomitrium patens
Pp3c8_14160 2.0kb upstream 2.0kb upstream 7345 true Chr08: 9213907-9221251 Physcomitrium patens
Pp3c8_14160 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9219252-9221251 Physcomitrium patens
Pp3c8_14160 2.0kb downstream 2.0kb downstream 7345 true Chr08: 9211907-9219251 Physcomitrium patens
Pp3c8_14160 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9211907-9213906 Physcomitrium patens
Pp3c8_14160 5.0kb upstream 5.0kb upstream 10345 true Chr08: 9213907-9224251 Physcomitrium patens
Pp3c8_14160 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9219252-9224251 Physcomitrium patens
Pp3c8_14160 5.0kb downstream 5.0kb downstream 10345 true Chr08: 9208907-9219251 Physcomitrium patens
Pp3c8_14160 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9208907-9213906 Physcomitrium patens
Pp3c8_14160 10.0kb upstream 10.0kb upstream 15345 true Chr08: 9213907-9229251 Physcomitrium patens
Pp3c8_14160 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9219252-9229251 Physcomitrium patens
Pp3c8_14160 10.0kb downstream 10.0kb downstream 15345 true Chr08: 9203907-9219251 Physcomitrium patens
Pp3c8_14160 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9203907-9213906 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343824 5274 Embryophyte View MSA
123426537 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.734       Low
cufflinks 5.275        
cufflinks 4.323        
cufflinks 7.761       High
cufflinks 3.745        
cufflinks 1.696       Low
cufflinks 4.903        
cufflinks 1.694       Low
cufflinks 5.349        
cufflinks 5.405        
cufflinks 4.079        
cufflinks 5.584        
cufflinks 3.659        
cufflinks 4.43        
cufflinks 3.253        
cufflinks 3.862        
cufflinks 4.831        
cufflinks 4.938        
cufflinks 5.826        
cufflinks 4.137        
cufflinks 4.616        
cufflinks 5.507        
cufflinks 4.136        
cufflinks 5.074        
cufflinks 5.229        
cufflinks 1.633       Low
cufflinks 5.333        
cufflinks 6.356       High
cufflinks 3.356        
cufflinks 5.426        

0 Strain