Gene : Pp3c4_7550 P. patens v3.3
Defline:  (1 of 1) PTHR21963 - PF6 Genomic Order:  355
Name:  ? Pp3c4_7550 Secondary Identifier:  ? PAC:32921376
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c4_7550 0.5kb upstream 0.5kb upstream 13850 true Chr04: 5357408-5371257 Physcomitrium patens
Pp3c4_7550 0.5kb upstream 0.5kb upstream 500 false Chr04: 5357408-5357907 Physcomitrium patens
Pp3c4_7550 0.5kb downstream 0.5kb downstream 13850 true Chr04: 5357908-5371757 Physcomitrium patens
Pp3c4_7550 0.5kb downstream 0.5kb downstream 500 false Chr04: 5371258-5371757 Physcomitrium patens
Pp3c4_7550 1.0kb upstream 1.0kb upstream 14350 true Chr04: 5356908-5371257 Physcomitrium patens
Pp3c4_7550 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5356908-5357907 Physcomitrium patens
Pp3c4_7550 1.0kb downstream 1.0kb downstream 14350 true Chr04: 5357908-5372257 Physcomitrium patens
Pp3c4_7550 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5371258-5372257 Physcomitrium patens
Pp3c4_7550 2.0kb upstream 2.0kb upstream 15350 true Chr04: 5355908-5371257 Physcomitrium patens
Pp3c4_7550 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5355908-5357907 Physcomitrium patens
Pp3c4_7550 2.0kb downstream 2.0kb downstream 15350 true Chr04: 5357908-5373257 Physcomitrium patens
Pp3c4_7550 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5371258-5373257 Physcomitrium patens
Pp3c4_7550 5.0kb upstream 5.0kb upstream 18350 true Chr04: 5352908-5371257 Physcomitrium patens
Pp3c4_7550 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5352908-5357907 Physcomitrium patens
Pp3c4_7550 5.0kb downstream 5.0kb downstream 18350 true Chr04: 5357908-5376257 Physcomitrium patens
Pp3c4_7550 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5371258-5376257 Physcomitrium patens
Pp3c4_7550 10.0kb upstream 10.0kb upstream 23350 true Chr04: 5347908-5371257 Physcomitrium patens
Pp3c4_7550 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5347908-5357907 Physcomitrium patens
Pp3c4_7550 10.0kb downstream 10.0kb downstream 23350 true Chr04: 5357908-5381257 Physcomitrium patens
Pp3c4_7550 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5371258-5381257 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343366 5274 Embryophyte View MSA
123379626 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.067        
cufflinks 0.01     Low  
cufflinks 0.003     Low Low
cufflinks 0.062     Low  
cufflinks 0.057     Low  
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.057     Low  
cufflinks 0.064     Low  
cufflinks 0.055     Low  
cufflinks 0.691       High
cufflinks 0.037     Low  
cufflinks 0.053     Low  
cufflinks 0.051     Low  
cufflinks 0.221       High
cufflinks 0.014     Low  
cufflinks 0.002     Low Low
cufflinks 0.025     Low  
cufflinks 0.001     Low Low
cufflinks 0.024     Low  
cufflinks 0.199       High
cufflinks 0.062     Low  
cufflinks 0.047     Low  
cufflinks 0.057     Low  
cufflinks 0.151       High
cufflinks 0.083        
cufflinks 0.016     Low  
cufflinks 0.028     Low  
cufflinks 0.011     Low  
cufflinks 0.005     Low Low

0 Strain