Gene : Pp3c2_18600 P. patens v3.3
Defline:  (1 of 16) 2.4.1.255 - Protein O-GlcNAc transferase / OGTase Genomic Order:  954
Name:  ? Pp3c2_18600 Secondary Identifier:  ? PAC:32934238
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-7437 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c2_18600 0.5kb upstream 0.5kb upstream 3924 true Chr02: 12075868-12079791 Physcomitrium patens
Pp3c2_18600 0.5kb upstream 0.5kb upstream 500 false Chr02: 12079292-12079791 Physcomitrium patens
Pp3c2_18600 0.5kb downstream 0.5kb downstream 3924 true Chr02: 12075368-12079291 Physcomitrium patens
Pp3c2_18600 0.5kb downstream 0.5kb downstream 500 false Chr02: 12075368-12075867 Physcomitrium patens
Pp3c2_18600 1.0kb upstream 1.0kb upstream 4424 true Chr02: 12075868-12080291 Physcomitrium patens
Pp3c2_18600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 12079292-12080291 Physcomitrium patens
Pp3c2_18600 1.0kb downstream 1.0kb downstream 4424 true Chr02: 12074868-12079291 Physcomitrium patens
Pp3c2_18600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 12074868-12075867 Physcomitrium patens
Pp3c2_18600 2.0kb upstream 2.0kb upstream 5424 true Chr02: 12075868-12081291 Physcomitrium patens
Pp3c2_18600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 12079292-12081291 Physcomitrium patens
Pp3c2_18600 2.0kb downstream 2.0kb downstream 5424 true Chr02: 12073868-12079291 Physcomitrium patens
Pp3c2_18600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 12073868-12075867 Physcomitrium patens
Pp3c2_18600 5.0kb upstream 5.0kb upstream 8424 true Chr02: 12075868-12084291 Physcomitrium patens
Pp3c2_18600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 12079292-12084291 Physcomitrium patens
Pp3c2_18600 5.0kb downstream 5.0kb downstream 8424 true Chr02: 12070868-12079291 Physcomitrium patens
Pp3c2_18600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 12070868-12075867 Physcomitrium patens
Pp3c2_18600 10.0kb upstream 10.0kb upstream 13424 true Chr02: 12075868-12089291 Physcomitrium patens
Pp3c2_18600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 12079292-12089291 Physcomitrium patens
Pp3c2_18600 10.0kb downstream 10.0kb downstream 13424 true Chr02: 12065868-12079291 Physcomitrium patens
Pp3c2_18600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 12065868-12075867 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345033 5274 Embryophyte View MSA
123428414 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.473        
cufflinks 1.466        
cufflinks 1.347        
cufflinks 1.748        
cufflinks 0.783        
cufflinks 1.342        
cufflinks 1.207        
cufflinks 1.25        
cufflinks 1.331        
cufflinks 1.854        
cufflinks 1.01        
cufflinks 1.32        
cufflinks 1.152        
cufflinks 1.51        
cufflinks 1.803        
cufflinks 0.648        
cufflinks 1.457        
cufflinks 3.118       High
cufflinks 0.975        
cufflinks 0.155       Low
cufflinks 1.29        
cufflinks 2.012       High
cufflinks 1.033        
cufflinks 0.579        
cufflinks 1.187        
cufflinks 1.834        
cufflinks 0.155       Low
cufflinks 0.969        
cufflinks 0.493       Low
cufflinks 0.476       Low

0 Strain