Gene : Pp3c1_3340 P. patens v3.3
Defline:  (1 of 3) PTHR10799:SF537 - PROTEIN PQN-41, ISOFORM B-RELATED Genomic Order:  141
Name:  ? Pp3c1_3340 Secondary Identifier:  ? PAC:32969388
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_3340 0.5kb upstream 0.5kb upstream 11958 true Chr01: 2654430-2666387 Physcomitrium patens
Pp3c1_3340 0.5kb upstream 0.5kb upstream 500 false Chr01: 2654430-2654929 Physcomitrium patens
Pp3c1_3340 0.5kb downstream 0.5kb downstream 11958 true Chr01: 2654930-2666887 Physcomitrium patens
Pp3c1_3340 0.5kb downstream 0.5kb downstream 500 false Chr01: 2666388-2666887 Physcomitrium patens
Pp3c1_3340 1.0kb upstream 1.0kb upstream 12458 true Chr01: 2653930-2666387 Physcomitrium patens
Pp3c1_3340 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2653930-2654929 Physcomitrium patens
Pp3c1_3340 1.0kb downstream 1.0kb downstream 12458 true Chr01: 2654930-2667387 Physcomitrium patens
Pp3c1_3340 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2666388-2667387 Physcomitrium patens
Pp3c1_3340 2.0kb upstream 2.0kb upstream 13458 true Chr01: 2652930-2666387 Physcomitrium patens
Pp3c1_3340 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2652930-2654929 Physcomitrium patens
Pp3c1_3340 2.0kb downstream 2.0kb downstream 13458 true Chr01: 2654930-2668387 Physcomitrium patens
Pp3c1_3340 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2666388-2668387 Physcomitrium patens
Pp3c1_3340 5.0kb upstream 5.0kb upstream 16458 true Chr01: 2649930-2666387 Physcomitrium patens
Pp3c1_3340 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2649930-2654929 Physcomitrium patens
Pp3c1_3340 5.0kb downstream 5.0kb downstream 16458 true Chr01: 2654930-2671387 Physcomitrium patens
Pp3c1_3340 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2666388-2671387 Physcomitrium patens
Pp3c1_3340 10.0kb upstream 10.0kb upstream 21458 true Chr01: 2644930-2666387 Physcomitrium patens
Pp3c1_3340 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2644930-2654929 Physcomitrium patens
Pp3c1_3340 10.0kb downstream 10.0kb downstream 21458 true Chr01: 2654930-2676387 Physcomitrium patens
Pp3c1_3340 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2666388-2676387 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344676 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.456        
cufflinks 3.312       Low
cufflinks 2.342       Low
cufflinks 7.375        
cufflinks 14.223     High High
cufflinks 5.075        
cufflinks 5.363        
cufflinks 16.903       High
cufflinks 8.954        
cufflinks 8.648        
cufflinks 5.149        
cufflinks 7.888        
cufflinks 5.076        
cufflinks 2.498       Low
cufflinks 3.908        
cufflinks 3.993        
cufflinks 6.343        
cufflinks 7.196        
cufflinks 5.713        
cufflinks 7.875        
cufflinks 4.726        
cufflinks 8.4        
cufflinks 5.92        
cufflinks 7.586        
cufflinks 14.14     High High
cufflinks 5.556        
cufflinks 2.97       Low
cufflinks 4.988        
cufflinks 6.977        
cufflinks 10.721       High

0 Strain