Gene : Pp3c1_35980 P. patens v3.3
Defline:  (1 of 1) PTHR14781:SF0 - TETRATRICOPEPTIDE REPEAT PROTEIN 26 Genomic Order:  1728
Name:  ? Pp3c1_35980 Secondary Identifier:  ? PAC:32968682
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_35980 0.5kb upstream 0.5kb upstream 4121 true Chr01: 25163285-25167405 Physcomitrium patens
Pp3c1_35980 0.5kb upstream 0.5kb upstream 500 false Chr01: 25166906-25167405 Physcomitrium patens
Pp3c1_35980 0.5kb downstream 0.5kb downstream 4121 true Chr01: 25162785-25166905 Physcomitrium patens
Pp3c1_35980 0.5kb downstream 0.5kb downstream 500 false Chr01: 25162785-25163284 Physcomitrium patens
Pp3c1_35980 1.0kb upstream 1.0kb upstream 4621 true Chr01: 25163285-25167905 Physcomitrium patens
Pp3c1_35980 1.0kb upstream 1.0kb upstream 1000 false Chr01: 25166906-25167905 Physcomitrium patens
Pp3c1_35980 1.0kb downstream 1.0kb downstream 4621 true Chr01: 25162285-25166905 Physcomitrium patens
Pp3c1_35980 1.0kb downstream 1.0kb downstream 1000 false Chr01: 25162285-25163284 Physcomitrium patens
Pp3c1_35980 2.0kb upstream 2.0kb upstream 5621 true Chr01: 25163285-25168905 Physcomitrium patens
Pp3c1_35980 2.0kb upstream 2.0kb upstream 2000 false Chr01: 25166906-25168905 Physcomitrium patens
Pp3c1_35980 2.0kb downstream 2.0kb downstream 5621 true Chr01: 25161285-25166905 Physcomitrium patens
Pp3c1_35980 2.0kb downstream 2.0kb downstream 2000 false Chr01: 25161285-25163284 Physcomitrium patens
Pp3c1_35980 5.0kb upstream 5.0kb upstream 8621 true Chr01: 25163285-25171905 Physcomitrium patens
Pp3c1_35980 5.0kb upstream 5.0kb upstream 5000 false Chr01: 25166906-25171905 Physcomitrium patens
Pp3c1_35980 5.0kb downstream 5.0kb downstream 8621 true Chr01: 25158285-25166905 Physcomitrium patens
Pp3c1_35980 5.0kb downstream 5.0kb downstream 5000 false Chr01: 25158285-25163284 Physcomitrium patens
Pp3c1_35980 10.0kb upstream 10.0kb upstream 13621 true Chr01: 25163285-25176905 Physcomitrium patens
Pp3c1_35980 10.0kb upstream 10.0kb upstream 10000 false Chr01: 25166906-25176905 Physcomitrium patens
Pp3c1_35980 10.0kb downstream 10.0kb downstream 13621 true Chr01: 25153285-25166905 Physcomitrium patens
Pp3c1_35980 10.0kb downstream 10.0kb downstream 10000 false Chr01: 25153285-25163284 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343702 5274 Embryophyte View MSA
123427301 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.02        
cufflinks 0.017     Low  
cufflinks 0.008     Low Low
cufflinks 0.012     Low  
cufflinks 0.047     Low  
cufflinks 0.183        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.28        
cufflinks 0.921        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.802        
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 36.178     High High
cufflinks 3.061        
cufflinks 2.351        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  

0 Strain