Gene : Pp3c27_7700 P. patens v3.3
Defline:  (1 of 2) KOG1420 - Ca2+-activated K+ channel Slowpoke, alpha subunit Genomic Order:  372
Name:  ? Pp3c27_7700 Secondary Identifier:  ? PAC:32952130
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_7700 0.5kb upstream 0.5kb upstream 9680 true Chr27: 4597579-4607258 Physcomitrium patens
Pp3c27_7700 0.5kb upstream 0.5kb upstream 500 false Chr27: 4597579-4598078 Physcomitrium patens
Pp3c27_7700 0.5kb downstream 0.5kb downstream 9680 true Chr27: 4598079-4607758 Physcomitrium patens
Pp3c27_7700 0.5kb downstream 0.5kb downstream 500 false Chr27: 4607259-4607758 Physcomitrium patens
Pp3c27_7700 1.0kb upstream 1.0kb upstream 10180 true Chr27: 4597079-4607258 Physcomitrium patens
Pp3c27_7700 1.0kb upstream 1.0kb upstream 1000 false Chr27: 4597079-4598078 Physcomitrium patens
Pp3c27_7700 1.0kb downstream 1.0kb downstream 10180 true Chr27: 4598079-4608258 Physcomitrium patens
Pp3c27_7700 1.0kb downstream 1.0kb downstream 1000 false Chr27: 4607259-4608258 Physcomitrium patens
Pp3c27_7700 2.0kb upstream 2.0kb upstream 11180 true Chr27: 4596079-4607258 Physcomitrium patens
Pp3c27_7700 2.0kb upstream 2.0kb upstream 2000 false Chr27: 4596079-4598078 Physcomitrium patens
Pp3c27_7700 2.0kb downstream 2.0kb downstream 11180 true Chr27: 4598079-4609258 Physcomitrium patens
Pp3c27_7700 2.0kb downstream 2.0kb downstream 2000 false Chr27: 4607259-4609258 Physcomitrium patens
Pp3c27_7700 5.0kb upstream 5.0kb upstream 14180 true Chr27: 4593079-4607258 Physcomitrium patens
Pp3c27_7700 5.0kb upstream 5.0kb upstream 5000 false Chr27: 4593079-4598078 Physcomitrium patens
Pp3c27_7700 5.0kb downstream 5.0kb downstream 14180 true Chr27: 4598079-4612258 Physcomitrium patens
Pp3c27_7700 5.0kb downstream 5.0kb downstream 5000 false Chr27: 4607259-4612258 Physcomitrium patens
Pp3c27_7700 10.0kb upstream 10.0kb upstream 19180 true Chr27: 4588079-4607258 Physcomitrium patens
Pp3c27_7700 10.0kb upstream 10.0kb upstream 10000 false Chr27: 4588079-4598078 Physcomitrium patens
Pp3c27_7700 10.0kb downstream 10.0kb downstream 19180 true Chr27: 4598079-4617258 Physcomitrium patens
Pp3c27_7700 10.0kb downstream 10.0kb downstream 10000 false Chr27: 4607259-4617258 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343381 5274 Embryophyte View MSA
123427734 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.285     High High
cufflinks 1.212       Low
cufflinks 1.14       Low
cufflinks 14.566       High
cufflinks 22.837     High High
cufflinks 3.443        
cufflinks 6.777        
cufflinks 5.528        
cufflinks 9.742        
cufflinks 13.758       High
cufflinks 4.34        
cufflinks 3.812        
cufflinks 6.141        
cufflinks 9.37        
cufflinks 0.685       Low
cufflinks 0.734       Low
cufflinks 18.254       High
cufflinks 3.986        
cufflinks 3.722        
cufflinks 2.38        
cufflinks 3.399        
cufflinks 0.826       Low
cufflinks 0.62       Low
cufflinks 2.533        
cufflinks 8.883        
cufflinks 0.741       Low
cufflinks 15.344     High High
cufflinks 1.728        
cufflinks 2.053        
cufflinks 10.733        

0 Strain