Gene : Pp3c27_7320 P. patens v3.3
Defline:  (1 of 4) 6.1.1.7 - Alanine--tRNA ligase / Alanyl-tRNA synthetase Genomic Order:  352
Name:  ? Pp3c27_7320 Secondary Identifier:  ? PAC:32951371
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens TRNA-CHARGING-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_7320 0.5kb upstream 0.5kb upstream 10573 true Chr27: 4360256-4370828 Physcomitrium patens
Pp3c27_7320 0.5kb upstream 0.5kb upstream 500 false Chr27: 4360256-4360755 Physcomitrium patens
Pp3c27_7320 0.5kb downstream 0.5kb downstream 10573 true Chr27: 4360756-4371328 Physcomitrium patens
Pp3c27_7320 0.5kb downstream 0.5kb downstream 500 false Chr27: 4370829-4371328 Physcomitrium patens
Pp3c27_7320 1.0kb upstream 1.0kb upstream 11073 true Chr27: 4359756-4370828 Physcomitrium patens
Pp3c27_7320 1.0kb upstream 1.0kb upstream 1000 false Chr27: 4359756-4360755 Physcomitrium patens
Pp3c27_7320 1.0kb downstream 1.0kb downstream 11073 true Chr27: 4360756-4371828 Physcomitrium patens
Pp3c27_7320 1.0kb downstream 1.0kb downstream 1000 false Chr27: 4370829-4371828 Physcomitrium patens
Pp3c27_7320 2.0kb upstream 2.0kb upstream 12073 true Chr27: 4358756-4370828 Physcomitrium patens
Pp3c27_7320 2.0kb upstream 2.0kb upstream 2000 false Chr27: 4358756-4360755 Physcomitrium patens
Pp3c27_7320 2.0kb downstream 2.0kb downstream 12073 true Chr27: 4360756-4372828 Physcomitrium patens
Pp3c27_7320 2.0kb downstream 2.0kb downstream 2000 false Chr27: 4370829-4372828 Physcomitrium patens
Pp3c27_7320 5.0kb upstream 5.0kb upstream 15073 true Chr27: 4355756-4370828 Physcomitrium patens
Pp3c27_7320 5.0kb upstream 5.0kb upstream 5000 false Chr27: 4355756-4360755 Physcomitrium patens
Pp3c27_7320 5.0kb downstream 5.0kb downstream 15073 true Chr27: 4360756-4375828 Physcomitrium patens
Pp3c27_7320 5.0kb downstream 5.0kb downstream 5000 false Chr27: 4370829-4375828 Physcomitrium patens
Pp3c27_7320 10.0kb upstream 10.0kb upstream 20073 true Chr27: 4350756-4370828 Physcomitrium patens
Pp3c27_7320 10.0kb upstream 10.0kb upstream 10000 false Chr27: 4350756-4360755 Physcomitrium patens
Pp3c27_7320 10.0kb downstream 10.0kb downstream 20073 true Chr27: 4360756-4380828 Physcomitrium patens
Pp3c27_7320 10.0kb downstream 10.0kb downstream 10000 false Chr27: 4370829-4380828 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 58.277     High  
cufflinks 65.129     High  
cufflinks 37.19     High Low
cufflinks 77.695     High  
cufflinks 59.022     High  
cufflinks 57.878     High  
cufflinks 84.346     High High
cufflinks 28.82     High Low
cufflinks 50.385     High  
cufflinks 59.676     High  
cufflinks 52.07     High  
cufflinks 57.408     High  
cufflinks 48.72     High  
cufflinks 57.275     High  
cufflinks 61.213     High  
cufflinks 74.303     High  
cufflinks 66.316     High  
cufflinks 50.4     High  
cufflinks 61.538     High  
cufflinks 70.251     High  
cufflinks 86.085     High High
cufflinks 42.282     High Low
cufflinks 70.354     High  
cufflinks 93.995     High High
cufflinks 86.72     High High
cufflinks 32.239     High Low
cufflinks 65.541     High  
cufflinks 79.595     High  
cufflinks 44.552     High Low
cufflinks 93.81     High High

0 Strain