Gene : Pp3c25_12820 P. patens v3.3
Defline:  (1 of 2) PTHR23130:SF80 - AUXIN-INDUCED IN ROOT CULTURES PROTEIN 12 Genomic Order:  535
Name:  ? Pp3c25_12820 Secondary Identifier:  ? PAC:32979930
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c25_12820 0.5kb upstream 0.5kb upstream 3347 true Chr25: 9076622-9079968 Physcomitrium patens
Pp3c25_12820 0.5kb upstream 0.5kb upstream 500 false Chr25: 9079469-9079968 Physcomitrium patens
Pp3c25_12820 0.5kb downstream 0.5kb downstream 3347 true Chr25: 9076122-9079468 Physcomitrium patens
Pp3c25_12820 0.5kb downstream 0.5kb downstream 500 false Chr25: 9076122-9076621 Physcomitrium patens
Pp3c25_12820 1.0kb upstream 1.0kb upstream 3847 true Chr25: 9076622-9080468 Physcomitrium patens
Pp3c25_12820 1.0kb upstream 1.0kb upstream 1000 false Chr25: 9079469-9080468 Physcomitrium patens
Pp3c25_12820 1.0kb downstream 1.0kb downstream 3847 true Chr25: 9075622-9079468 Physcomitrium patens
Pp3c25_12820 1.0kb downstream 1.0kb downstream 1000 false Chr25: 9075622-9076621 Physcomitrium patens
Pp3c25_12820 2.0kb upstream 2.0kb upstream 4847 true Chr25: 9076622-9081468 Physcomitrium patens
Pp3c25_12820 2.0kb upstream 2.0kb upstream 2000 false Chr25: 9079469-9081468 Physcomitrium patens
Pp3c25_12820 2.0kb downstream 2.0kb downstream 4847 true Chr25: 9074622-9079468 Physcomitrium patens
Pp3c25_12820 2.0kb downstream 2.0kb downstream 2000 false Chr25: 9074622-9076621 Physcomitrium patens
Pp3c25_12820 5.0kb upstream 5.0kb upstream 7847 true Chr25: 9076622-9084468 Physcomitrium patens
Pp3c25_12820 5.0kb upstream 5.0kb upstream 5000 false Chr25: 9079469-9084468 Physcomitrium patens
Pp3c25_12820 5.0kb downstream 5.0kb downstream 7847 true Chr25: 9071622-9079468 Physcomitrium patens
Pp3c25_12820 5.0kb downstream 5.0kb downstream 5000 false Chr25: 9071622-9076621 Physcomitrium patens
Pp3c25_12820 10.0kb upstream 10.0kb upstream 12847 true Chr25: 9076622-9089468 Physcomitrium patens
Pp3c25_12820 10.0kb upstream 10.0kb upstream 10000 false Chr25: 9079469-9089468 Physcomitrium patens
Pp3c25_12820 10.0kb downstream 10.0kb downstream 12847 true Chr25: 9066622-9079468 Physcomitrium patens
Pp3c25_12820 10.0kb downstream 10.0kb downstream 10000 false Chr25: 9066622-9076621 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348347 5274 Embryophyte View MSA
123428624 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.228        
cufflinks 0.029     Low Low
cufflinks 0.021     Low Low
cufflinks 1.53        
cufflinks 0.788        
cufflinks 1.273        
cufflinks 0.319        
cufflinks 7.431       High
cufflinks 0.119        
cufflinks 0.378        
cufflinks 0.07     Low  
cufflinks 0.005     Low Low
cufflinks 0.86        
cufflinks 0.099        
cufflinks 0.841        
cufflinks 0.18        
cufflinks 0.078        
cufflinks 15.908       High
cufflinks 0.003     Low Low
cufflinks 0.479        
cufflinks 1.038        
cufflinks 2.49       High
cufflinks 0.067        
cufflinks 0.507        
cufflinks 2.338       High
cufflinks 2.255       High
cufflinks 2.898       High
cufflinks 0.08     Low  
cufflinks 0.34        
cufflinks 0.15        

0 Strain