Gene : Pp3c23_11430 P. patens v3.3
Defline:  (1 of 2) PTHR11390:SF27 - DNA TOPOISOMERASE Genomic Order:  473
Name:  ? Pp3c23_11430 Secondary Identifier:  ? PAC:32948684
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c23_11430 0.5kb upstream 0.5kb upstream 10112 true Chr23: 7834435-7844546 Physcomitrium patens
Pp3c23_11430 0.5kb upstream 0.5kb upstream 500 false Chr23: 7834435-7834934 Physcomitrium patens
Pp3c23_11430 0.5kb downstream 0.5kb downstream 10112 true Chr23: 7834935-7845046 Physcomitrium patens
Pp3c23_11430 0.5kb downstream 0.5kb downstream 500 false Chr23: 7844547-7845046 Physcomitrium patens
Pp3c23_11430 1.0kb upstream 1.0kb upstream 10612 true Chr23: 7833935-7844546 Physcomitrium patens
Pp3c23_11430 1.0kb upstream 1.0kb upstream 1000 false Chr23: 7833935-7834934 Physcomitrium patens
Pp3c23_11430 1.0kb downstream 1.0kb downstream 10612 true Chr23: 7834935-7845546 Physcomitrium patens
Pp3c23_11430 1.0kb downstream 1.0kb downstream 1000 false Chr23: 7844547-7845546 Physcomitrium patens
Pp3c23_11430 2.0kb upstream 2.0kb upstream 11612 true Chr23: 7832935-7844546 Physcomitrium patens
Pp3c23_11430 2.0kb upstream 2.0kb upstream 2000 false Chr23: 7832935-7834934 Physcomitrium patens
Pp3c23_11430 2.0kb downstream 2.0kb downstream 11612 true Chr23: 7834935-7846546 Physcomitrium patens
Pp3c23_11430 2.0kb downstream 2.0kb downstream 2000 false Chr23: 7844547-7846546 Physcomitrium patens
Pp3c23_11430 5.0kb upstream 5.0kb upstream 14612 true Chr23: 7829935-7844546 Physcomitrium patens
Pp3c23_11430 5.0kb upstream 5.0kb upstream 5000 false Chr23: 7829935-7834934 Physcomitrium patens
Pp3c23_11430 5.0kb downstream 5.0kb downstream 14612 true Chr23: 7834935-7849546 Physcomitrium patens
Pp3c23_11430 5.0kb downstream 5.0kb downstream 5000 false Chr23: 7844547-7849546 Physcomitrium patens
Pp3c23_11430 10.0kb upstream 10.0kb upstream 19612 true Chr23: 7824935-7844546 Physcomitrium patens
Pp3c23_11430 10.0kb upstream 10.0kb upstream 10000 false Chr23: 7824935-7834934 Physcomitrium patens
Pp3c23_11430 10.0kb downstream 10.0kb downstream 19612 true Chr23: 7834935-7854546 Physcomitrium patens
Pp3c23_11430 10.0kb downstream 10.0kb downstream 10000 false Chr23: 7844547-7854546 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351439 5274 Embryophyte View MSA
123426817 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.973     High Low
cufflinks 28.2     High  
cufflinks 39.373     High  
cufflinks 26.321     High  
cufflinks 40.14     High  
cufflinks 24.904     High  
cufflinks 41.755     High High
cufflinks 35.821     High  
cufflinks 14.582       Low
cufflinks 17.521       Low
cufflinks 22.546     High  
cufflinks 32.303     High  
cufflinks 29.033     High  
cufflinks 31.315     High  
cufflinks 23.811     High  
cufflinks 36.216     High  
cufflinks 33.689     High  
cufflinks 36.013     High  
cufflinks 9.66       Low
cufflinks 26.299     High  
cufflinks 27.403     High  
cufflinks 40.452     High  
cufflinks 43.069     High High
cufflinks 60.811     High High
cufflinks 22.845     High  
cufflinks 22.155     High  
cufflinks 33.173     High  
cufflinks 25.824     High  
cufflinks 12.327       Low
cufflinks 30.328     High  

0 Strain