Gene : Pp3c22_21010 P. patens v3.3
Defline:  (1 of 1) PTHR12686 - 3'-5' EXORIBONUCLEASE CSL4-RELATED Genomic Order:  903
Name:  ? Pp3c22_21010 Secondary Identifier:  ? PAC:32904257
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_21010 0.5kb upstream 0.5kb upstream 3158 true Chr22: 14074519-14077676 Physcomitrium patens
Pp3c22_21010 0.5kb upstream 0.5kb upstream 500 false Chr22: 14077177-14077676 Physcomitrium patens
Pp3c22_21010 0.5kb downstream 0.5kb downstream 3158 true Chr22: 14074019-14077176 Physcomitrium patens
Pp3c22_21010 0.5kb downstream 0.5kb downstream 500 false Chr22: 14074019-14074518 Physcomitrium patens
Pp3c22_21010 1.0kb upstream 1.0kb upstream 3658 true Chr22: 14074519-14078176 Physcomitrium patens
Pp3c22_21010 1.0kb upstream 1.0kb upstream 1000 false Chr22: 14077177-14078176 Physcomitrium patens
Pp3c22_21010 1.0kb downstream 1.0kb downstream 3658 true Chr22: 14073519-14077176 Physcomitrium patens
Pp3c22_21010 1.0kb downstream 1.0kb downstream 1000 false Chr22: 14073519-14074518 Physcomitrium patens
Pp3c22_21010 2.0kb upstream 2.0kb upstream 4658 true Chr22: 14074519-14079176 Physcomitrium patens
Pp3c22_21010 2.0kb upstream 2.0kb upstream 2000 false Chr22: 14077177-14079176 Physcomitrium patens
Pp3c22_21010 2.0kb downstream 2.0kb downstream 4658 true Chr22: 14072519-14077176 Physcomitrium patens
Pp3c22_21010 2.0kb downstream 2.0kb downstream 2000 false Chr22: 14072519-14074518 Physcomitrium patens
Pp3c22_21010 5.0kb upstream 5.0kb upstream 7658 true Chr22: 14074519-14082176 Physcomitrium patens
Pp3c22_21010 5.0kb upstream 5.0kb upstream 5000 false Chr22: 14077177-14082176 Physcomitrium patens
Pp3c22_21010 5.0kb downstream 5.0kb downstream 7658 true Chr22: 14069519-14077176 Physcomitrium patens
Pp3c22_21010 5.0kb downstream 5.0kb downstream 5000 false Chr22: 14069519-14074518 Physcomitrium patens
Pp3c22_21010 10.0kb upstream 10.0kb upstream 12658 true Chr22: 14074519-14087176 Physcomitrium patens
Pp3c22_21010 10.0kb upstream 10.0kb upstream 10000 false Chr22: 14077177-14087176 Physcomitrium patens
Pp3c22_21010 10.0kb downstream 10.0kb downstream 12658 true Chr22: 14064519-14077176 Physcomitrium patens
Pp3c22_21010 10.0kb downstream 10.0kb downstream 10000 false Chr22: 14064519-14074518 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347552 5274 Embryophyte View MSA
123423947 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.98       Low
cufflinks 14.698        
cufflinks 28.495     High High
cufflinks 21.008        
cufflinks 21.728     High  
cufflinks 34.946     High High
cufflinks 24.061     High  
cufflinks 26.252     High High
cufflinks 19.178     High  
cufflinks 21.72     High  
cufflinks 16.484        
cufflinks 13.159       Low
cufflinks 13.297       Low
cufflinks 7.505       Low
cufflinks 16.217        
cufflinks 13.842        
cufflinks 20.312        
cufflinks 23.059        
cufflinks 22.073     High  
cufflinks 12.101       Low
cufflinks 15.285     High  
cufflinks 24.139     High  
cufflinks 27.933     High High
cufflinks 21.215        
cufflinks 17.253        
cufflinks 19.359     High  
cufflinks 17.866        
cufflinks 13.889        
cufflinks 20.567     High  
cufflinks 26.17     High High

0 Strain