Gene : Pp3c20_7850 P. patens v3.3
Defline:  (1 of 1) PTHR11731:SF140 - PROTEIN DPF-5, ISOFORM A Genomic Order:  413
Name:  ? Pp3c20_7850 Secondary Identifier:  ? PAC:32945291
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c20_7850 0.5kb upstream 0.5kb upstream 7335 true Chr20: 4805971-4813305 Physcomitrium patens
Pp3c20_7850 0.5kb upstream 0.5kb upstream 500 false Chr20: 4805971-4806470 Physcomitrium patens
Pp3c20_7850 0.5kb downstream 0.5kb downstream 7335 true Chr20: 4806471-4813805 Physcomitrium patens
Pp3c20_7850 0.5kb downstream 0.5kb downstream 500 false Chr20: 4813306-4813805 Physcomitrium patens
Pp3c20_7850 1.0kb upstream 1.0kb upstream 7835 true Chr20: 4805471-4813305 Physcomitrium patens
Pp3c20_7850 1.0kb upstream 1.0kb upstream 1000 false Chr20: 4805471-4806470 Physcomitrium patens
Pp3c20_7850 1.0kb downstream 1.0kb downstream 7835 true Chr20: 4806471-4814305 Physcomitrium patens
Pp3c20_7850 1.0kb downstream 1.0kb downstream 1000 false Chr20: 4813306-4814305 Physcomitrium patens
Pp3c20_7850 2.0kb upstream 2.0kb upstream 8835 true Chr20: 4804471-4813305 Physcomitrium patens
Pp3c20_7850 2.0kb upstream 2.0kb upstream 2000 false Chr20: 4804471-4806470 Physcomitrium patens
Pp3c20_7850 2.0kb downstream 2.0kb downstream 8835 true Chr20: 4806471-4815305 Physcomitrium patens
Pp3c20_7850 2.0kb downstream 2.0kb downstream 2000 false Chr20: 4813306-4815305 Physcomitrium patens
Pp3c20_7850 5.0kb upstream 5.0kb upstream 11835 true Chr20: 4801471-4813305 Physcomitrium patens
Pp3c20_7850 5.0kb upstream 5.0kb upstream 5000 false Chr20: 4801471-4806470 Physcomitrium patens
Pp3c20_7850 5.0kb downstream 5.0kb downstream 11835 true Chr20: 4806471-4818305 Physcomitrium patens
Pp3c20_7850 5.0kb downstream 5.0kb downstream 5000 false Chr20: 4813306-4818305 Physcomitrium patens
Pp3c20_7850 10.0kb upstream 10.0kb upstream 16835 true Chr20: 4796471-4813305 Physcomitrium patens
Pp3c20_7850 10.0kb upstream 10.0kb upstream 10000 false Chr20: 4796471-4806470 Physcomitrium patens
Pp3c20_7850 10.0kb downstream 10.0kb downstream 16835 true Chr20: 4806471-4823305 Physcomitrium patens
Pp3c20_7850 10.0kb downstream 10.0kb downstream 10000 false Chr20: 4813306-4823305 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342568 5274 Embryophyte View MSA
123379087 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.335     High  
cufflinks 38.455     High  
cufflinks 26.657     High  
cufflinks 13.83        
cufflinks 1.88       Low
cufflinks 34.739     High  
cufflinks 39.391     High  
cufflinks 52.247     High  
cufflinks 12.267        
cufflinks 30.868     High  
cufflinks 19.544     High  
cufflinks 21.932     High  
cufflinks 42.741     High  
cufflinks 22.698     High  
cufflinks 29.762     High  
cufflinks 34.169     High  
cufflinks 41.321     High  
cufflinks 20.156     High  
cufflinks 26.031     High  
cufflinks 29.348     High  
cufflinks 23.802     High  
cufflinks 43.844     High  
cufflinks 3.058       Low
cufflinks 56.194     High High
cufflinks 51.608     High  
cufflinks 29.968     High  
cufflinks 13.45        
cufflinks 47.77     High  
cufflinks 2.403       Low
cufflinks 35.177     High  

0 Strain