Gene : Pp3c17_18130 P. patens v3.3
Defline:  (1 of 17) PF00046//PF02183 - Homeobox domain (Homeobox) // Homeobox associated leucine zipper (HALZ) Genomic Order:  836
Name:  ? Pp3c17_18130 Secondary Identifier:  ? PAC:32905826
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c17_18130 0.5kb upstream 0.5kb upstream 3002 true Chr17: 12206148-12209149 Physcomitrium patens
Pp3c17_18130 0.5kb upstream 0.5kb upstream 500 false Chr17: 12208650-12209149 Physcomitrium patens
Pp3c17_18130 0.5kb downstream 0.5kb downstream 3002 true Chr17: 12205648-12208649 Physcomitrium patens
Pp3c17_18130 0.5kb downstream 0.5kb downstream 500 false Chr17: 12205648-12206147 Physcomitrium patens
Pp3c17_18130 1.0kb upstream 1.0kb upstream 3502 true Chr17: 12206148-12209649 Physcomitrium patens
Pp3c17_18130 1.0kb upstream 1.0kb upstream 1000 false Chr17: 12208650-12209649 Physcomitrium patens
Pp3c17_18130 1.0kb downstream 1.0kb downstream 3502 true Chr17: 12205148-12208649 Physcomitrium patens
Pp3c17_18130 1.0kb downstream 1.0kb downstream 1000 false Chr17: 12205148-12206147 Physcomitrium patens
Pp3c17_18130 2.0kb upstream 2.0kb upstream 4502 true Chr17: 12206148-12210649 Physcomitrium patens
Pp3c17_18130 2.0kb upstream 2.0kb upstream 2000 false Chr17: 12208650-12210649 Physcomitrium patens
Pp3c17_18130 2.0kb downstream 2.0kb downstream 4502 true Chr17: 12204148-12208649 Physcomitrium patens
Pp3c17_18130 2.0kb downstream 2.0kb downstream 2000 false Chr17: 12204148-12206147 Physcomitrium patens
Pp3c17_18130 5.0kb upstream 5.0kb upstream 7502 true Chr17: 12206148-12213649 Physcomitrium patens
Pp3c17_18130 5.0kb upstream 5.0kb upstream 5000 false Chr17: 12208650-12213649 Physcomitrium patens
Pp3c17_18130 5.0kb downstream 5.0kb downstream 7502 true Chr17: 12201148-12208649 Physcomitrium patens
Pp3c17_18130 5.0kb downstream 5.0kb downstream 5000 false Chr17: 12201148-12206147 Physcomitrium patens
Pp3c17_18130 10.0kb upstream 10.0kb upstream 12502 true Chr17: 12206148-12218649 Physcomitrium patens
Pp3c17_18130 10.0kb upstream 10.0kb upstream 10000 false Chr17: 12208650-12218649 Physcomitrium patens
Pp3c17_18130 10.0kb downstream 10.0kb downstream 12502 true Chr17: 12196148-12208649 Physcomitrium patens
Pp3c17_18130 10.0kb downstream 10.0kb downstream 10000 false Chr17: 12196148-12206147 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 118.816     High  
cufflinks 301.751     High  
cufflinks 512.361     High High
cufflinks 275.171     High  
cufflinks 115.466     High  
cufflinks 76.019     High  
cufflinks 241.338     High  
cufflinks 73.369     High  
cufflinks 186.801     High  
cufflinks 2.045       Low
cufflinks 64.222     High  
cufflinks 95.793     High  
cufflinks 154.372     High  
cufflinks 221.178     High  
cufflinks 200.736     High  
cufflinks 328.217     High  
cufflinks 99.138     High  
cufflinks 132.586     High  
cufflinks 145.897     High  
cufflinks 205.998     High  
cufflinks 265.338     High  
cufflinks 348.889     High  
cufflinks 286.556     High  
cufflinks 26.67     High Low
cufflinks 173.684     High  
cufflinks 127.318     High  
cufflinks 25.489     High Low
cufflinks 28.838     High Low
cufflinks 106.363     High  
cufflinks 181.989     High  

0 Strain