Gene : Pp3c13_650 P. patens v3.3
Defline:  (1 of 4) PTHR24148:SF6 - ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39 HOMOLOG Genomic Order:  17
Name:  ? Pp3c13_650 Secondary Identifier:  ? PAC:32929966
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c13_650 0.5kb upstream 0.5kb upstream 12094 true Chr13: 378011-390104 Physcomitrium patens
Pp3c13_650 0.5kb upstream 0.5kb upstream 500 false Chr13: 389605-390104 Physcomitrium patens
Pp3c13_650 0.5kb downstream 0.5kb downstream 12094 true Chr13: 377511-389604 Physcomitrium patens
Pp3c13_650 0.5kb downstream 0.5kb downstream 500 false Chr13: 377511-378010 Physcomitrium patens
Pp3c13_650 1.0kb upstream 1.0kb upstream 12594 true Chr13: 378011-390604 Physcomitrium patens
Pp3c13_650 1.0kb upstream 1.0kb upstream 1000 false Chr13: 389605-390604 Physcomitrium patens
Pp3c13_650 1.0kb downstream 1.0kb downstream 12594 true Chr13: 377011-389604 Physcomitrium patens
Pp3c13_650 1.0kb downstream 1.0kb downstream 1000 false Chr13: 377011-378010 Physcomitrium patens
Pp3c13_650 2.0kb upstream 2.0kb upstream 13594 true Chr13: 378011-391604 Physcomitrium patens
Pp3c13_650 2.0kb upstream 2.0kb upstream 2000 false Chr13: 389605-391604 Physcomitrium patens
Pp3c13_650 2.0kb downstream 2.0kb downstream 13594 true Chr13: 376011-389604 Physcomitrium patens
Pp3c13_650 2.0kb downstream 2.0kb downstream 2000 false Chr13: 376011-378010 Physcomitrium patens
Pp3c13_650 5.0kb upstream 5.0kb upstream 16594 true Chr13: 378011-394604 Physcomitrium patens
Pp3c13_650 5.0kb upstream 5.0kb upstream 5000 false Chr13: 389605-394604 Physcomitrium patens
Pp3c13_650 5.0kb downstream 5.0kb downstream 16594 true Chr13: 373011-389604 Physcomitrium patens
Pp3c13_650 5.0kb downstream 5.0kb downstream 5000 false Chr13: 373011-378010 Physcomitrium patens
Pp3c13_650 10.0kb upstream 10.0kb upstream 21594 true Chr13: 378011-399604 Physcomitrium patens
Pp3c13_650 10.0kb upstream 10.0kb upstream 10000 false Chr13: 389605-399604 Physcomitrium patens
Pp3c13_650 10.0kb downstream 10.0kb downstream 21594 true Chr13: 368011-389604 Physcomitrium patens
Pp3c13_650 10.0kb downstream 10.0kb downstream 10000 false Chr13: 368011-378010 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121328887 5274 Embryophyte Singleton cluster - no MSA
123365883 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.291       High
cufflinks 10.116       High
cufflinks 3.19        
cufflinks 4.126        
cufflinks 7.894        
cufflinks 5.361        
cufflinks 3.912        
cufflinks 4.169        
cufflinks 10.423       High
cufflinks 10.204       High
cufflinks 5.432        
cufflinks 3.959        
cufflinks 7.381        
cufflinks 9.507       High
cufflinks 1.437       Low
cufflinks 5.9        
cufflinks 9.758       High
cufflinks 5.874        
cufflinks 0.819       Low
cufflinks 4.954        
cufflinks 2.243       Low
cufflinks 3.269        
cufflinks 2.688        
cufflinks 4.675        
cufflinks 2.191       Low
cufflinks 7.579        
cufflinks 5.373        
cufflinks 4.558        
cufflinks 4.594        
cufflinks 3.575        

0 Strain