Gene : Pp3c12_12000 P. patens v3.3
Defline:  (1 of 25) PF06985 - Heterokaryon incompatibility protein (HET) (HET) Genomic Order:  536
Name:  ? Pp3c12_12000 Secondary Identifier:  ? PAC:32972449
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c12_12000 0.5kb upstream 0.5kb upstream 4407 true Chr12: 7898575-7902981 Physcomitrium patens
Pp3c12_12000 0.5kb upstream 0.5kb upstream 500 false Chr12: 7902482-7902981 Physcomitrium patens
Pp3c12_12000 0.5kb downstream 0.5kb downstream 4407 true Chr12: 7898075-7902481 Physcomitrium patens
Pp3c12_12000 0.5kb downstream 0.5kb downstream 500 false Chr12: 7898075-7898574 Physcomitrium patens
Pp3c12_12000 1.0kb upstream 1.0kb upstream 4907 true Chr12: 7898575-7903481 Physcomitrium patens
Pp3c12_12000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 7902482-7903481 Physcomitrium patens
Pp3c12_12000 1.0kb downstream 1.0kb downstream 4907 true Chr12: 7897575-7902481 Physcomitrium patens
Pp3c12_12000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 7897575-7898574 Physcomitrium patens
Pp3c12_12000 2.0kb upstream 2.0kb upstream 5907 true Chr12: 7898575-7904481 Physcomitrium patens
Pp3c12_12000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 7902482-7904481 Physcomitrium patens
Pp3c12_12000 2.0kb downstream 2.0kb downstream 5907 true Chr12: 7896575-7902481 Physcomitrium patens
Pp3c12_12000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 7896575-7898574 Physcomitrium patens
Pp3c12_12000 5.0kb upstream 5.0kb upstream 8907 true Chr12: 7898575-7907481 Physcomitrium patens
Pp3c12_12000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 7902482-7907481 Physcomitrium patens
Pp3c12_12000 5.0kb downstream 5.0kb downstream 8907 true Chr12: 7893575-7902481 Physcomitrium patens
Pp3c12_12000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 7893575-7898574 Physcomitrium patens
Pp3c12_12000 10.0kb upstream 10.0kb upstream 13907 true Chr12: 7898575-7912481 Physcomitrium patens
Pp3c12_12000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 7902482-7912481 Physcomitrium patens
Pp3c12_12000 10.0kb downstream 10.0kb downstream 13907 true Chr12: 7888575-7902481 Physcomitrium patens
Pp3c12_12000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 7888575-7898574 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336975 5274 Embryophyte View MSA
123373777 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.026       Low
cufflinks 2.448        
cufflinks 5.062       High
cufflinks 5.175       High
cufflinks 3.294        
cufflinks 2.645        
cufflinks 4.323       High
cufflinks 2.836        
cufflinks 1.623        
cufflinks 2.272        
cufflinks 2.581        
cufflinks 5.224       High
cufflinks 2.785        
cufflinks 1.537        
cufflinks 2.8        
cufflinks 1.241       Low
cufflinks 3.236        
cufflinks 2.801        
cufflinks 0.972       Low
cufflinks 2.812        
cufflinks 1.311       Low
cufflinks 2.843        
cufflinks 1.559        
cufflinks 2.312        
cufflinks 3.199        
cufflinks 0.903       Low
cufflinks 4.365       High
cufflinks 2.557        
cufflinks 3.161        
cufflinks 3.858        

0 Strain