Gene : Bradi3g13397 B. distachyon v3.1
Defline:  (1 of 3) 6.1.1.17 - Glutamate--tRNA ligase / Glutamyl-tRNA synthetase Genomic Order:  1651
Name:  ? Bradi3g13397 Secondary Identifier:  ? PAC:32817868
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5188 Brachypodium distachyon pathologic  
Bdistachyon PWY-5918 Brachypodium distachyon pathologic  
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g13397 0.5kb upstream 0.5kb upstream 3426 true Bd3: 11876931-11880356 Brachypodium distachyon
Bradi3g13397 0.5kb upstream 0.5kb upstream 500 false Bd3: 11876931-11877430 Brachypodium distachyon
Bradi3g13397 0.5kb downstream 0.5kb downstream 3426 true Bd3: 11877431-11880856 Brachypodium distachyon
Bradi3g13397 0.5kb downstream 0.5kb downstream 500 false Bd3: 11880357-11880856 Brachypodium distachyon
Bradi3g13397 1.0kb upstream 1.0kb upstream 3926 true Bd3: 11876431-11880356 Brachypodium distachyon
Bradi3g13397 1.0kb upstream 1.0kb upstream 1000 false Bd3: 11876431-11877430 Brachypodium distachyon
Bradi3g13397 1.0kb downstream 1.0kb downstream 3926 true Bd3: 11877431-11881356 Brachypodium distachyon
Bradi3g13397 1.0kb downstream 1.0kb downstream 1000 false Bd3: 11880357-11881356 Brachypodium distachyon
Bradi3g13397 2.0kb upstream 2.0kb upstream 4926 true Bd3: 11875431-11880356 Brachypodium distachyon
Bradi3g13397 2.0kb upstream 2.0kb upstream 2000 false Bd3: 11875431-11877430 Brachypodium distachyon
Bradi3g13397 2.0kb downstream 2.0kb downstream 4926 true Bd3: 11877431-11882356 Brachypodium distachyon
Bradi3g13397 2.0kb downstream 2.0kb downstream 2000 false Bd3: 11880357-11882356 Brachypodium distachyon
Bradi3g13397 5.0kb upstream 5.0kb upstream 7926 true Bd3: 11872431-11880356 Brachypodium distachyon
Bradi3g13397 5.0kb upstream 5.0kb upstream 5000 false Bd3: 11872431-11877430 Brachypodium distachyon
Bradi3g13397 5.0kb downstream 5.0kb downstream 7926 true Bd3: 11877431-11885356 Brachypodium distachyon
Bradi3g13397 5.0kb downstream 5.0kb downstream 5000 false Bd3: 11880357-11885356 Brachypodium distachyon
Bradi3g13397 10.0kb upstream 10.0kb upstream 12926 true Bd3: 11867431-11880356 Brachypodium distachyon
Bradi3g13397 10.0kb upstream 10.0kb upstream 10000 false Bd3: 11867431-11877430 Brachypodium distachyon
Bradi3g13397 10.0kb downstream 10.0kb downstream 12926 true Bd3: 11877431-11890356 Brachypodium distachyon
Bradi3g13397 10.0kb downstream 10.0kb downstream 10000 false Bd3: 11880357-11890356 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124546485 5269 Grass View MSA
122046625 5273 Angiosperm View MSA
121349445 5274 Embryophyte View MSA
123426828 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.177        
cufflinks 7.441        
cufflinks 7.102        
cufflinks 6.568        
cufflinks 1.787       Low
cufflinks 5.33        
cufflinks 5.339        
cufflinks 4.82        
cufflinks 5.816        
cufflinks 3.035        
cufflinks 2.842        
cufflinks 3.93        
cufflinks 2.123        
cufflinks 2.653        
cufflinks 3.074        
cufflinks 5.672        
cufflinks 3.68        
cufflinks 9.186       High
cufflinks 3.544        
cufflinks 0.373       Low
cufflinks 5.3        
cufflinks 5.48        
cufflinks 4.707        
cufflinks 4.856        
cufflinks 5.433        
cufflinks 5.743        
cufflinks 4.107        
cufflinks 5.481        
cufflinks 5.06        
cufflinks 6.865        

0 Strain