Gene : Bradi3g08090 B. distachyon v3.1
Defline:  (1 of 2) PTHR11668:SF248 - SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-1 CATALYTIC SUBUNIT-RELATED Genomic Order:  1029
Name:  ? Bradi3g08090 Secondary Identifier:  ? PAC:32822423
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g08090 0.5kb upstream 0.5kb upstream 5212 true Bd3: 6300375-6305586 Brachypodium distachyon
Bradi3g08090 0.5kb upstream 0.5kb upstream 500 false Bd3: 6305087-6305586 Brachypodium distachyon
Bradi3g08090 0.5kb downstream 0.5kb downstream 5212 true Bd3: 6299875-6305086 Brachypodium distachyon
Bradi3g08090 0.5kb downstream 0.5kb downstream 500 false Bd3: 6299875-6300374 Brachypodium distachyon
Bradi3g08090 1.0kb upstream 1.0kb upstream 5712 true Bd3: 6300375-6306086 Brachypodium distachyon
Bradi3g08090 1.0kb upstream 1.0kb upstream 1000 false Bd3: 6305087-6306086 Brachypodium distachyon
Bradi3g08090 1.0kb downstream 1.0kb downstream 5712 true Bd3: 6299375-6305086 Brachypodium distachyon
Bradi3g08090 1.0kb downstream 1.0kb downstream 1000 false Bd3: 6299375-6300374 Brachypodium distachyon
Bradi3g08090 2.0kb upstream 2.0kb upstream 6712 true Bd3: 6300375-6307086 Brachypodium distachyon
Bradi3g08090 2.0kb upstream 2.0kb upstream 2000 false Bd3: 6305087-6307086 Brachypodium distachyon
Bradi3g08090 2.0kb downstream 2.0kb downstream 6712 true Bd3: 6298375-6305086 Brachypodium distachyon
Bradi3g08090 2.0kb downstream 2.0kb downstream 2000 false Bd3: 6298375-6300374 Brachypodium distachyon
Bradi3g08090 5.0kb upstream 5.0kb upstream 9712 true Bd3: 6300375-6310086 Brachypodium distachyon
Bradi3g08090 5.0kb upstream 5.0kb upstream 5000 false Bd3: 6305087-6310086 Brachypodium distachyon
Bradi3g08090 5.0kb downstream 5.0kb downstream 9712 true Bd3: 6295375-6305086 Brachypodium distachyon
Bradi3g08090 5.0kb downstream 5.0kb downstream 5000 false Bd3: 6295375-6300374 Brachypodium distachyon
Bradi3g08090 10.0kb upstream 10.0kb upstream 14712 true Bd3: 6300375-6315086 Brachypodium distachyon
Bradi3g08090 10.0kb upstream 10.0kb upstream 10000 false Bd3: 6305087-6315086 Brachypodium distachyon
Bradi3g08090 10.0kb downstream 10.0kb downstream 14712 true Bd3: 6290375-6305086 Brachypodium distachyon
Bradi3g08090 10.0kb downstream 10.0kb downstream 10000 false Bd3: 6290375-6300374 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578143 5269 Grass View MSA
122051234 5273 Angiosperm View MSA
121344776 5274 Embryophyte View MSA
123425839 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.121     High High
cufflinks 9.332        
cufflinks 9.175        
cufflinks 7.467        
cufflinks 8.379        
cufflinks 9.72     High  
cufflinks 9.787     High  
cufflinks 7.197        
cufflinks 8.146        
cufflinks 7.84        
cufflinks 7.376        
cufflinks 8.08        
cufflinks 6.725       Low
cufflinks 6.625       Low
cufflinks 6.069       Low
cufflinks 9.899     High  
cufflinks 11.423     High  
cufflinks 16.318     High High
cufflinks 13.982     High High
cufflinks 9.732        
cufflinks 14.353     High High
cufflinks 7.917        
cufflinks 7.046        
cufflinks 8.653        
cufflinks 9.83     High  
cufflinks 9.34        
cufflinks 8.802        
cufflinks 9.17        
cufflinks 8.9        
cufflinks 12.847     High High

0 Strain