Gene : Bradi3g01560 B. distachyon v3.1
Defline:  (1 of 2) K03012 - DNA-directed RNA polymerase II subunit RPB4 (RPB4, POLR2D) Genomic Order:  165
Name:  ? Bradi3g01560 Secondary Identifier:  ? PAC:32821277
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g01560 0.5kb upstream 0.5kb upstream 1394 true Bd3: 979303-980696 Brachypodium distachyon
Bradi3g01560 0.5kb upstream 0.5kb upstream 500 false Bd3: 979303-979802 Brachypodium distachyon
Bradi3g01560 0.5kb downstream 0.5kb downstream 1394 true Bd3: 979803-981196 Brachypodium distachyon
Bradi3g01560 0.5kb downstream 0.5kb downstream 500 false Bd3: 980697-981196 Brachypodium distachyon
Bradi3g01560 1.0kb upstream 1.0kb upstream 1894 true Bd3: 978803-980696 Brachypodium distachyon
Bradi3g01560 1.0kb upstream 1.0kb upstream 1000 false Bd3: 978803-979802 Brachypodium distachyon
Bradi3g01560 1.0kb downstream 1.0kb downstream 1894 true Bd3: 979803-981696 Brachypodium distachyon
Bradi3g01560 1.0kb downstream 1.0kb downstream 1000 false Bd3: 980697-981696 Brachypodium distachyon
Bradi3g01560 2.0kb upstream 2.0kb upstream 2894 true Bd3: 977803-980696 Brachypodium distachyon
Bradi3g01560 2.0kb upstream 2.0kb upstream 2000 false Bd3: 977803-979802 Brachypodium distachyon
Bradi3g01560 2.0kb downstream 2.0kb downstream 2894 true Bd3: 979803-982696 Brachypodium distachyon
Bradi3g01560 2.0kb downstream 2.0kb downstream 2000 false Bd3: 980697-982696 Brachypodium distachyon
Bradi3g01560 5.0kb upstream 5.0kb upstream 5894 true Bd3: 974803-980696 Brachypodium distachyon
Bradi3g01560 5.0kb upstream 5.0kb upstream 5000 false Bd3: 974803-979802 Brachypodium distachyon
Bradi3g01560 5.0kb downstream 5.0kb downstream 5894 true Bd3: 979803-985696 Brachypodium distachyon
Bradi3g01560 5.0kb downstream 5.0kb downstream 5000 false Bd3: 980697-985696 Brachypodium distachyon
Bradi3g01560 10.0kb upstream 10.0kb upstream 10894 true Bd3: 969803-980696 Brachypodium distachyon
Bradi3g01560 10.0kb upstream 10.0kb upstream 10000 false Bd3: 969803-979802 Brachypodium distachyon
Bradi3g01560 10.0kb downstream 10.0kb downstream 10894 true Bd3: 979803-990696 Brachypodium distachyon
Bradi3g01560 10.0kb downstream 10.0kb downstream 10000 false Bd3: 980697-990696 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575039 5269 Grass View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.712     High Low
cufflinks 32.018     High  
cufflinks 33.803     High  
cufflinks 34.055     High  
cufflinks 30.465     High  
cufflinks 32.26     High  
cufflinks 40.038     High  
cufflinks 37.668     High  
cufflinks 34.024     High  
cufflinks 63.531     High High
cufflinks 34.73     High  
cufflinks 19.996     High Low
cufflinks 29.324     High  
cufflinks 34.08     High  
cufflinks 23.631     High Low
cufflinks 27.079     High Low
cufflinks 41.916     High  
cufflinks 40.428     High  
cufflinks 63.926     High High
cufflinks 46.238     High  
cufflinks 61.69     High High
cufflinks 36.088     High  
cufflinks 37.183     High  
cufflinks 32.073     High  
cufflinks 36.153     High  
cufflinks 36.695     High  
cufflinks 38.934     High  
cufflinks 52.041     High High
cufflinks 43.065     High  
cufflinks 36.56     High  

0 Strain