Gene : Bradi1g78690 B. distachyon v3.1
Defline:  (1 of 1) PTHR13428 - INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN Genomic Order:  9880
Name:  ? Bradi1g78690 Secondary Identifier:  ? PAC:32798152
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g78690 0.5kb upstream 0.5kb upstream 2385 true Bd1: 74806952-74809336 Brachypodium distachyon
Bradi1g78690 0.5kb upstream 0.5kb upstream 500 false Bd1: 74806952-74807451 Brachypodium distachyon
Bradi1g78690 0.5kb downstream 0.5kb downstream 2385 true Bd1: 74807452-74809836 Brachypodium distachyon
Bradi1g78690 0.5kb downstream 0.5kb downstream 500 false Bd1: 74809337-74809836 Brachypodium distachyon
Bradi1g78690 1.0kb upstream 1.0kb upstream 2885 true Bd1: 74806452-74809336 Brachypodium distachyon
Bradi1g78690 1.0kb upstream 1.0kb upstream 1000 false Bd1: 74806452-74807451 Brachypodium distachyon
Bradi1g78690 1.0kb downstream 1.0kb downstream 2885 true Bd1: 74807452-74810336 Brachypodium distachyon
Bradi1g78690 1.0kb downstream 1.0kb downstream 1000 false Bd1: 74809337-74810336 Brachypodium distachyon
Bradi1g78690 2.0kb upstream 2.0kb upstream 3885 true Bd1: 74805452-74809336 Brachypodium distachyon
Bradi1g78690 2.0kb upstream 2.0kb upstream 2000 false Bd1: 74805452-74807451 Brachypodium distachyon
Bradi1g78690 2.0kb downstream 2.0kb downstream 3885 true Bd1: 74807452-74811336 Brachypodium distachyon
Bradi1g78690 2.0kb downstream 2.0kb downstream 2000 false Bd1: 74809337-74811336 Brachypodium distachyon
Bradi1g78690 5.0kb upstream 5.0kb upstream 6885 true Bd1: 74802452-74809336 Brachypodium distachyon
Bradi1g78690 5.0kb upstream 5.0kb upstream 5000 false Bd1: 74802452-74807451 Brachypodium distachyon
Bradi1g78690 5.0kb downstream 5.0kb downstream 6885 true Bd1: 74807452-74814336 Brachypodium distachyon
Bradi1g78690 5.0kb downstream 5.0kb downstream 5000 false Bd1: 74809337-74814336 Brachypodium distachyon
Bradi1g78690 10.0kb upstream 10.0kb upstream 11885 true Bd1: 74797452-74809336 Brachypodium distachyon
Bradi1g78690 10.0kb upstream 10.0kb upstream 10000 false Bd1: 74797452-74807451 Brachypodium distachyon
Bradi1g78690 10.0kb downstream 10.0kb downstream 11885 true Bd1: 74807452-74819336 Brachypodium distachyon
Bradi1g78690 10.0kb downstream 10.0kb downstream 10000 false Bd1: 74809337-74819336 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575474 5269 Grass View MSA
122043959 5273 Angiosperm View MSA
121347546 5274 Embryophyte View MSA
123380568 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.703        
cufflinks 4.811       Low
cufflinks 8.694        
cufflinks 5.267        
cufflinks 6.907        
cufflinks 5.024        
cufflinks 4.342       Low
cufflinks 4.554       Low
cufflinks 5.011        
cufflinks 10.862     High  
cufflinks 11.656     High High
cufflinks 4.694       Low
cufflinks 4.79       Low
cufflinks 6.449        
cufflinks 4.759       Low
cufflinks 4.41       Low
cufflinks 9.438        
cufflinks 9.513        
cufflinks 13.285     High High
cufflinks 15.304     High High
cufflinks 13.885     High High
cufflinks 8.454        
cufflinks 4.78       Low
cufflinks 4.716       Low
cufflinks 5.544        
cufflinks 9.504        
cufflinks 8.388        
cufflinks 11.045     High  
cufflinks 9.695        
cufflinks 7.018        

0 Strain