Gene : Bradi5g10580 B. distachyon v3.1
Defline:  (1 of 1) PTHR22870//PTHR22870:SF213 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED Genomic Order:  1112
Name:  ? Bradi5g10580 Secondary Identifier:  ? PAC:32810331
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g10580 0.5kb upstream 0.5kb upstream 5985 true Bd5: 14006779-14012763 Brachypodium distachyon
Bradi5g10580 0.5kb upstream 0.5kb upstream 500 false Bd5: 14006779-14007278 Brachypodium distachyon
Bradi5g10580 0.5kb downstream 0.5kb downstream 5985 true Bd5: 14007279-14013263 Brachypodium distachyon
Bradi5g10580 0.5kb downstream 0.5kb downstream 500 false Bd5: 14012764-14013263 Brachypodium distachyon
Bradi5g10580 1.0kb upstream 1.0kb upstream 6485 true Bd5: 14006279-14012763 Brachypodium distachyon
Bradi5g10580 1.0kb upstream 1.0kb upstream 1000 false Bd5: 14006279-14007278 Brachypodium distachyon
Bradi5g10580 1.0kb downstream 1.0kb downstream 6485 true Bd5: 14007279-14013763 Brachypodium distachyon
Bradi5g10580 1.0kb downstream 1.0kb downstream 1000 false Bd5: 14012764-14013763 Brachypodium distachyon
Bradi5g10580 2.0kb upstream 2.0kb upstream 7485 true Bd5: 14005279-14012763 Brachypodium distachyon
Bradi5g10580 2.0kb upstream 2.0kb upstream 2000 false Bd5: 14005279-14007278 Brachypodium distachyon
Bradi5g10580 2.0kb downstream 2.0kb downstream 7485 true Bd5: 14007279-14014763 Brachypodium distachyon
Bradi5g10580 2.0kb downstream 2.0kb downstream 2000 false Bd5: 14012764-14014763 Brachypodium distachyon
Bradi5g10580 5.0kb upstream 5.0kb upstream 10485 true Bd5: 14002279-14012763 Brachypodium distachyon
Bradi5g10580 5.0kb upstream 5.0kb upstream 5000 false Bd5: 14002279-14007278 Brachypodium distachyon
Bradi5g10580 5.0kb downstream 5.0kb downstream 10485 true Bd5: 14007279-14017763 Brachypodium distachyon
Bradi5g10580 5.0kb downstream 5.0kb downstream 5000 false Bd5: 14012764-14017763 Brachypodium distachyon
Bradi5g10580 10.0kb upstream 10.0kb upstream 15485 true Bd5: 13997279-14012763 Brachypodium distachyon
Bradi5g10580 10.0kb upstream 10.0kb upstream 10000 false Bd5: 13997279-14007278 Brachypodium distachyon
Bradi5g10580 10.0kb downstream 10.0kb downstream 15485 true Bd5: 14007279-14022763 Brachypodium distachyon
Bradi5g10580 10.0kb downstream 10.0kb downstream 10000 false Bd5: 14012764-14022763 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569569 5269 Grass View MSA
122046022 5273 Angiosperm View MSA
121348497 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.382        
cufflinks 9.167       High
cufflinks 4.563        
cufflinks 6.93        
cufflinks 5.986        
cufflinks 6.129        
cufflinks 9.012       High
cufflinks 2.141       Low
cufflinks 3.814        
cufflinks 2.434       Low
cufflinks 3.42        
cufflinks 5.663        
cufflinks 4.107        
cufflinks 3.178        
cufflinks 2.569       Low
cufflinks 5.224        
cufflinks 4.801        
cufflinks 3.59        
cufflinks 22.935     High High
cufflinks 8.557        
cufflinks 5.672        
cufflinks 2.384       Low
cufflinks 2.112       Low
cufflinks 3.708        
cufflinks 6.141        
cufflinks 4.46        
cufflinks 4.391        
cufflinks 3.727        
cufflinks 3.041        
cufflinks 10.99       High

0 Strain