Gene : Bradi1g25990 B. distachyon v3.1
Defline:  (1 of 1) PTHR33974:SF2 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MSD21 Genomic Order:  3264
Name:  ? Bradi1g25990 Secondary Identifier:  ? PAC:32802964
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g25990 0.5kb upstream 0.5kb upstream 1767 true Bd1: 21116973-21118739 Brachypodium distachyon
Bradi1g25990 0.5kb upstream 0.5kb upstream 500 false Bd1: 21118240-21118739 Brachypodium distachyon
Bradi1g25990 0.5kb downstream 0.5kb downstream 1767 true Bd1: 21116473-21118239 Brachypodium distachyon
Bradi1g25990 0.5kb downstream 0.5kb downstream 500 false Bd1: 21116473-21116972 Brachypodium distachyon
Bradi1g25990 1.0kb upstream 1.0kb upstream 2267 true Bd1: 21116973-21119239 Brachypodium distachyon
Bradi1g25990 1.0kb upstream 1.0kb upstream 1000 false Bd1: 21118240-21119239 Brachypodium distachyon
Bradi1g25990 1.0kb downstream 1.0kb downstream 2267 true Bd1: 21115973-21118239 Brachypodium distachyon
Bradi1g25990 1.0kb downstream 1.0kb downstream 1000 false Bd1: 21115973-21116972 Brachypodium distachyon
Bradi1g25990 2.0kb upstream 2.0kb upstream 3267 true Bd1: 21116973-21120239 Brachypodium distachyon
Bradi1g25990 2.0kb upstream 2.0kb upstream 2000 false Bd1: 21118240-21120239 Brachypodium distachyon
Bradi1g25990 2.0kb downstream 2.0kb downstream 3267 true Bd1: 21114973-21118239 Brachypodium distachyon
Bradi1g25990 2.0kb downstream 2.0kb downstream 2000 false Bd1: 21114973-21116972 Brachypodium distachyon
Bradi1g25990 5.0kb upstream 5.0kb upstream 6267 true Bd1: 21116973-21123239 Brachypodium distachyon
Bradi1g25990 5.0kb upstream 5.0kb upstream 5000 false Bd1: 21118240-21123239 Brachypodium distachyon
Bradi1g25990 5.0kb downstream 5.0kb downstream 6267 true Bd1: 21111973-21118239 Brachypodium distachyon
Bradi1g25990 5.0kb downstream 5.0kb downstream 5000 false Bd1: 21111973-21116972 Brachypodium distachyon
Bradi1g25990 10.0kb upstream 10.0kb upstream 11267 true Bd1: 21116973-21128239 Brachypodium distachyon
Bradi1g25990 10.0kb upstream 10.0kb upstream 10000 false Bd1: 21118240-21128239 Brachypodium distachyon
Bradi1g25990 10.0kb downstream 10.0kb downstream 11267 true Bd1: 21106973-21118239 Brachypodium distachyon
Bradi1g25990 10.0kb downstream 10.0kb downstream 10000 false Bd1: 21106973-21116972 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580170 5269 Grass View MSA
122042622 5273 Angiosperm View MSA
121309991 5274 Embryophyte View MSA
123347602 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.563        
cufflinks 2.148       Low
cufflinks 4.857        
cufflinks 3.656        
cufflinks 6.872        
cufflinks 2.416       Low
cufflinks 2.385       Low
cufflinks 2.289       Low
cufflinks 3.263        
cufflinks 14.016     High High
cufflinks 1.97       Low
cufflinks 2.933        
cufflinks 5.451        
cufflinks 2.043       Low
cufflinks 5.23        
cufflinks 1.958       Low
cufflinks 8.044        
cufflinks 9.002        
cufflinks 3.919        
cufflinks 4.664        
cufflinks 23.314     High High
cufflinks 5.824        
cufflinks 3.1        
cufflinks 2.923        
cufflinks 3.115        
cufflinks 9.429        
cufflinks 3.019        
cufflinks 7.406        
cufflinks 5.279        
cufflinks 15.987     High High

0 Strain