Gene : AT2G40420 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22950//PTHR22950:SF323 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED Genomic Order:  3424
Name:  ? AT2G40420 Secondary Identifier:  ? PAC:19639344
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G40420 0.5kb upstream 0.5kb upstream 2492 true Chr2: 16876723-16879214 Arabidopsis thaliana
AT2G40420 0.5kb upstream 0.5kb upstream 500 false Chr2: 16876723-16877222 Arabidopsis thaliana
AT2G40420 0.5kb downstream 0.5kb downstream 2492 true Chr2: 16877223-16879714 Arabidopsis thaliana
AT2G40420 0.5kb downstream 0.5kb downstream 500 false Chr2: 16879215-16879714 Arabidopsis thaliana
AT2G40420 1.0kb upstream 1.0kb upstream 2992 true Chr2: 16876223-16879214 Arabidopsis thaliana
AT2G40420 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16876223-16877222 Arabidopsis thaliana
AT2G40420 1.0kb downstream 1.0kb downstream 2992 true Chr2: 16877223-16880214 Arabidopsis thaliana
AT2G40420 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16879215-16880214 Arabidopsis thaliana
AT2G40420 2.0kb upstream 2.0kb upstream 3992 true Chr2: 16875223-16879214 Arabidopsis thaliana
AT2G40420 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16875223-16877222 Arabidopsis thaliana
AT2G40420 2.0kb downstream 2.0kb downstream 3992 true Chr2: 16877223-16881214 Arabidopsis thaliana
AT2G40420 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16879215-16881214 Arabidopsis thaliana
AT2G40420 5.0kb upstream 5.0kb upstream 6992 true Chr2: 16872223-16879214 Arabidopsis thaliana
AT2G40420 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16872223-16877222 Arabidopsis thaliana
AT2G40420 5.0kb downstream 5.0kb downstream 6992 true Chr2: 16877223-16884214 Arabidopsis thaliana
AT2G40420 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16879215-16884214 Arabidopsis thaliana
AT2G40420 10.0kb upstream 10.0kb upstream 11992 true Chr2: 16867223-16879214 Arabidopsis thaliana
AT2G40420 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16867223-16877222 Arabidopsis thaliana
AT2G40420 10.0kb downstream 10.0kb downstream 11992 true Chr2: 16877223-16889214 Arabidopsis thaliana
AT2G40420 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16879215-16889214 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374655 5261 Brassicaceae View MSA
123800798 5264 Brassicales-Malvales View MSA
124298168 5266 SBM View MSA
124149880 5268 Malvidae View MSA
123875601 5270 Rosid View MSA
123746056 5271 Pentapetalae View MSA
122795353 5272 Eudicot View MSA
122048665 5273 Angiosperm View MSA
121311064 5274 Embryophyte View MSA
123428317 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.06       Low
cufflinks 9.999        
cufflinks 11.342        
cufflinks 10.351        
cufflinks 12.133       High
cufflinks 9.112        

0 Strain