Gene : CPL3 A. thaliana TAIR10
Primary Identifier:  ? AT2G33540 Defline:  (1 of 1) PTHR23081:SF2 - RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3
Genomic Order:  2681 Name:  ? AT2G33540
Secondary Identifier:  ? PAC:19638249
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G33540 0.5kb upstream 0.5kb upstream 5793 true Chr2: 14203505-14209297 Arabidopsis thaliana
AT2G33540 0.5kb upstream 0.5kb upstream 500 false Chr2: 14208798-14209297 Arabidopsis thaliana
AT2G33540 0.5kb downstream 0.5kb downstream 5793 true Chr2: 14203005-14208797 Arabidopsis thaliana
AT2G33540 0.5kb downstream 0.5kb downstream 500 false Chr2: 14203005-14203504 Arabidopsis thaliana
AT2G33540 1.0kb upstream 1.0kb upstream 6293 true Chr2: 14203505-14209797 Arabidopsis thaliana
AT2G33540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 14208798-14209797 Arabidopsis thaliana
AT2G33540 1.0kb downstream 1.0kb downstream 6293 true Chr2: 14202505-14208797 Arabidopsis thaliana
AT2G33540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 14202505-14203504 Arabidopsis thaliana
AT2G33540 2.0kb upstream 2.0kb upstream 7293 true Chr2: 14203505-14210797 Arabidopsis thaliana
AT2G33540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 14208798-14210797 Arabidopsis thaliana
AT2G33540 2.0kb downstream 2.0kb downstream 7293 true Chr2: 14201505-14208797 Arabidopsis thaliana
AT2G33540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 14201505-14203504 Arabidopsis thaliana
AT2G33540 5.0kb upstream 5.0kb upstream 10293 true Chr2: 14203505-14213797 Arabidopsis thaliana
AT2G33540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 14208798-14213797 Arabidopsis thaliana
AT2G33540 5.0kb downstream 5.0kb downstream 10293 true Chr2: 14198505-14208797 Arabidopsis thaliana
AT2G33540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 14198505-14203504 Arabidopsis thaliana
AT2G33540 10.0kb upstream 10.0kb upstream 15293 true Chr2: 14203505-14218797 Arabidopsis thaliana
AT2G33540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 14208798-14218797 Arabidopsis thaliana
AT2G33540 10.0kb downstream 10.0kb downstream 15293 true Chr2: 14193505-14208797 Arabidopsis thaliana
AT2G33540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 14193505-14203504 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373358 5261 Brassicaceae View MSA
123830154 5264 Brassicales-Malvales View MSA
124341336 5266 SBM View MSA
124237655 5268 Malvidae View MSA
124067730 5270 Rosid View MSA
123744658 5271 Pentapetalae View MSA
122790839 5272 Eudicot View MSA
122047500 5273 Angiosperm View MSA
121346684 5274 Embryophyte View MSA
123423764 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.447        
cufflinks 11.609       High
cufflinks 4.298       Low
cufflinks 8.488        
cufflinks 4.243       Low
cufflinks 9.135        

0 Strain