Gene : MBF1A A. thaliana TAIR10
Primary Identifier:  ? AT2G42680 Defline:  (1 of 3) K03627 - putative transcription factor (MBF1)
Genomic Order:  3667 Name:  ? AT2G42680
Secondary Identifier:  ? PAC:19642090
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42680 0.5kb upstream 0.5kb upstream 1918 true Chr2: 17774403-17776320 Arabidopsis thaliana
AT2G42680 0.5kb upstream 0.5kb upstream 500 false Chr2: 17774403-17774902 Arabidopsis thaliana
AT2G42680 0.5kb downstream 0.5kb downstream 1918 true Chr2: 17774903-17776820 Arabidopsis thaliana
AT2G42680 0.5kb downstream 0.5kb downstream 500 false Chr2: 17776321-17776820 Arabidopsis thaliana
AT2G42680 1.0kb upstream 1.0kb upstream 2418 true Chr2: 17773903-17776320 Arabidopsis thaliana
AT2G42680 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17773903-17774902 Arabidopsis thaliana
AT2G42680 1.0kb downstream 1.0kb downstream 2418 true Chr2: 17774903-17777320 Arabidopsis thaliana
AT2G42680 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17776321-17777320 Arabidopsis thaliana
AT2G42680 2.0kb upstream 2.0kb upstream 3418 true Chr2: 17772903-17776320 Arabidopsis thaliana
AT2G42680 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17772903-17774902 Arabidopsis thaliana
AT2G42680 2.0kb downstream 2.0kb downstream 3418 true Chr2: 17774903-17778320 Arabidopsis thaliana
AT2G42680 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17776321-17778320 Arabidopsis thaliana
AT2G42680 5.0kb upstream 5.0kb upstream 6418 true Chr2: 17769903-17776320 Arabidopsis thaliana
AT2G42680 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17769903-17774902 Arabidopsis thaliana
AT2G42680 5.0kb downstream 5.0kb downstream 6418 true Chr2: 17774903-17781320 Arabidopsis thaliana
AT2G42680 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17776321-17781320 Arabidopsis thaliana
AT2G42680 10.0kb upstream 10.0kb upstream 11418 true Chr2: 17764903-17776320 Arabidopsis thaliana
AT2G42680 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17764903-17774902 Arabidopsis thaliana
AT2G42680 10.0kb downstream 10.0kb downstream 11418 true Chr2: 17774903-17786320 Arabidopsis thaliana
AT2G42680 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17776321-17786320 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363054 5261 Brassicaceae View MSA
123839300 5264 Brassicales-Malvales View MSA
124341063 5266 SBM View MSA
124251487 5268 Malvidae View MSA
124061849 5270 Rosid View MSA
123738727 5271 Pentapetalae View MSA
122792809 5272 Eudicot View MSA
122045533 5273 Angiosperm View MSA
121346970 5274 Embryophyte View MSA
123424283 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.854     High Low
cufflinks 68.506     High High
cufflinks 44.492     High  
cufflinks 63.681     High  
cufflinks 49.423     High  
cufflinks 53.359     High  

0 Strain