Gene : AT2G43230 A. thaliana TAIR10
Defline:  (1 of 8) K13436 - pto-interacting protein 1 (PTI1) Genomic Order:  3724
Name:  ? AT2G43230 Secondary Identifier:  ? PAC:19638469
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43230 0.5kb upstream 0.5kb upstream 2976 true Chr2: 17965751-17968726 Arabidopsis thaliana
AT2G43230 0.5kb upstream 0.5kb upstream 500 false Chr2: 17965751-17966250 Arabidopsis thaliana
AT2G43230 0.5kb downstream 0.5kb downstream 2976 true Chr2: 17966251-17969226 Arabidopsis thaliana
AT2G43230 0.5kb downstream 0.5kb downstream 500 false Chr2: 17968727-17969226 Arabidopsis thaliana
AT2G43230 1.0kb upstream 1.0kb upstream 3476 true Chr2: 17965251-17968726 Arabidopsis thaliana
AT2G43230 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17965251-17966250 Arabidopsis thaliana
AT2G43230 1.0kb downstream 1.0kb downstream 3476 true Chr2: 17966251-17969726 Arabidopsis thaliana
AT2G43230 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17968727-17969726 Arabidopsis thaliana
AT2G43230 2.0kb upstream 2.0kb upstream 4476 true Chr2: 17964251-17968726 Arabidopsis thaliana
AT2G43230 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17964251-17966250 Arabidopsis thaliana
AT2G43230 2.0kb downstream 2.0kb downstream 4476 true Chr2: 17966251-17970726 Arabidopsis thaliana
AT2G43230 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17968727-17970726 Arabidopsis thaliana
AT2G43230 5.0kb upstream 5.0kb upstream 7476 true Chr2: 17961251-17968726 Arabidopsis thaliana
AT2G43230 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17961251-17966250 Arabidopsis thaliana
AT2G43230 5.0kb downstream 5.0kb downstream 7476 true Chr2: 17966251-17973726 Arabidopsis thaliana
AT2G43230 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17968727-17973726 Arabidopsis thaliana
AT2G43230 10.0kb upstream 10.0kb upstream 12476 true Chr2: 17956251-17968726 Arabidopsis thaliana
AT2G43230 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17956251-17966250 Arabidopsis thaliana
AT2G43230 10.0kb downstream 10.0kb downstream 12476 true Chr2: 17966251-17978726 Arabidopsis thaliana
AT2G43230 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17968727-17978726 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377446 5261 Brassicaceae View MSA
123836888 5264 Brassicales-Malvales View MSA
124350073 5266 SBM View MSA
124253132 5268 Malvidae View MSA
124060437 5270 Rosid View MSA
123746986 5271 Pentapetalae View MSA
122791632 5272 Eudicot View MSA
122044012 5273 Angiosperm View MSA
121347180 5274 Embryophyte View MSA
123380505 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.103     Low  
cufflinks 0.504       High
cufflinks 0.069     Low  
cufflinks 0.29     Low  
cufflinks 0.062     Low Low
cufflinks 0.436        

0 Strain