Gene : AT2G43490 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22957:SF211 - RAB GTPASE ACTIVATOR PROTEIN-RELATED Genomic Order:  3755
Name:  ? AT2G43490 Secondary Identifier:  ? PAC:19641313
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43490 0.5kb upstream 0.5kb upstream 4945 true Chr2: 18054392-18059336 Arabidopsis thaliana
AT2G43490 0.5kb upstream 0.5kb upstream 500 false Chr2: 18058837-18059336 Arabidopsis thaliana
AT2G43490 0.5kb downstream 0.5kb downstream 4945 true Chr2: 18053892-18058836 Arabidopsis thaliana
AT2G43490 0.5kb downstream 0.5kb downstream 500 false Chr2: 18053892-18054391 Arabidopsis thaliana
AT2G43490 1.0kb upstream 1.0kb upstream 5445 true Chr2: 18054392-18059836 Arabidopsis thaliana
AT2G43490 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18058837-18059836 Arabidopsis thaliana
AT2G43490 1.0kb downstream 1.0kb downstream 5445 true Chr2: 18053392-18058836 Arabidopsis thaliana
AT2G43490 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18053392-18054391 Arabidopsis thaliana
AT2G43490 2.0kb upstream 2.0kb upstream 6445 true Chr2: 18054392-18060836 Arabidopsis thaliana
AT2G43490 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18058837-18060836 Arabidopsis thaliana
AT2G43490 2.0kb downstream 2.0kb downstream 6445 true Chr2: 18052392-18058836 Arabidopsis thaliana
AT2G43490 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18052392-18054391 Arabidopsis thaliana
AT2G43490 5.0kb upstream 5.0kb upstream 9445 true Chr2: 18054392-18063836 Arabidopsis thaliana
AT2G43490 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18058837-18063836 Arabidopsis thaliana
AT2G43490 5.0kb downstream 5.0kb downstream 9445 true Chr2: 18049392-18058836 Arabidopsis thaliana
AT2G43490 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18049392-18054391 Arabidopsis thaliana
AT2G43490 10.0kb upstream 10.0kb upstream 14445 true Chr2: 18054392-18068836 Arabidopsis thaliana
AT2G43490 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18058837-18068836 Arabidopsis thaliana
AT2G43490 10.0kb downstream 10.0kb downstream 14445 true Chr2: 18044392-18058836 Arabidopsis thaliana
AT2G43490 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18044392-18054391 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368043 5261 Brassicaceae View MSA
123840707 5264 Brassicales-Malvales View MSA
124339089 5266 SBM View MSA
124241957 5268 Malvidae View MSA
124073722 5270 Rosid View MSA
123740918 5271 Pentapetalae View MSA
122769994 5272 Eudicot View MSA
122047744 5273 Angiosperm View MSA
121347877 5274 Embryophyte View MSA
123428253 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.837        
cufflinks 0.981        
cufflinks 0.802       Low
cufflinks 1.179       High
cufflinks 0.844        
cufflinks 1.012        

0 Strain