Gene : UBQ6 A. thaliana TAIR10
Primary Identifier:  ? AT2G47110 Defline:  (1 of 1) K02977//K08770 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A) // ubiquitin C (UBC)
Genomic Order:  4139 Name:  ? AT2G47110
Secondary Identifier:  ? PAC:19641987
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Ontology Annotation Displayer

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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47110 0.5kb upstream 0.5kb upstream 1211 true Chr2: 19344135-19345345 Arabidopsis thaliana
AT2G47110 0.5kb upstream 0.5kb upstream 500 false Chr2: 19344135-19344634 Arabidopsis thaliana
AT2G47110 0.5kb downstream 0.5kb downstream 1211 true Chr2: 19344635-19345845 Arabidopsis thaliana
AT2G47110 0.5kb downstream 0.5kb downstream 500 false Chr2: 19345346-19345845 Arabidopsis thaliana
AT2G47110 1.0kb upstream 1.0kb upstream 1711 true Chr2: 19343635-19345345 Arabidopsis thaliana
AT2G47110 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19343635-19344634 Arabidopsis thaliana
AT2G47110 1.0kb downstream 1.0kb downstream 1711 true Chr2: 19344635-19346345 Arabidopsis thaliana
AT2G47110 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19345346-19346345 Arabidopsis thaliana
AT2G47110 2.0kb upstream 2.0kb upstream 2711 true Chr2: 19342635-19345345 Arabidopsis thaliana
AT2G47110 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19342635-19344634 Arabidopsis thaliana
AT2G47110 2.0kb downstream 2.0kb downstream 2711 true Chr2: 19344635-19347345 Arabidopsis thaliana
AT2G47110 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19345346-19347345 Arabidopsis thaliana
AT2G47110 5.0kb upstream 5.0kb upstream 5711 true Chr2: 19339635-19345345 Arabidopsis thaliana
AT2G47110 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19339635-19344634 Arabidopsis thaliana
AT2G47110 5.0kb downstream 5.0kb downstream 5711 true Chr2: 19344635-19350345 Arabidopsis thaliana
AT2G47110 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19345346-19350345 Arabidopsis thaliana
AT2G47110 10.0kb upstream 10.0kb upstream 10711 true Chr2: 19334635-19345345 Arabidopsis thaliana
AT2G47110 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19334635-19344634 Arabidopsis thaliana
AT2G47110 10.0kb downstream 10.0kb downstream 10711 true Chr2: 19344635-19355345 Arabidopsis thaliana
AT2G47110 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19345346-19355345 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372595 5261 Brassicaceae View MSA
123837397 5264 Brassicales-Malvales View MSA
124350207 5266 SBM View MSA
124254445 5268 Malvidae View MSA
124071954 5270 Rosid View MSA
123736823 5271 Pentapetalae View MSA
122788692 5272 Eudicot View MSA
122045257 5273 Angiosperm View MSA
121350332 5274 Embryophyte View MSA
123424740 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 119.994     High  
cufflinks 196.854     High  
cufflinks 106.052     High  
cufflinks 204.272     High  
cufflinks 90.421     High Low
cufflinks 230.115     High High

0 Strain