Gene : AT2G32640 A. thaliana TAIR10
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  2577
Name:  ? AT2G32640 Secondary Identifier:  ? PAC:19641003
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CAROTENOID-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5943 Arabidopsis thaliana pathologic  
Athaliana PWY-5947 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G32640 0.5kb upstream 0.5kb upstream 4491 true Chr2: 13846919-13851409 Arabidopsis thaliana
AT2G32640 0.5kb upstream 0.5kb upstream 500 false Chr2: 13850910-13851409 Arabidopsis thaliana
AT2G32640 0.5kb downstream 0.5kb downstream 4491 true Chr2: 13846419-13850909 Arabidopsis thaliana
AT2G32640 0.5kb downstream 0.5kb downstream 500 false Chr2: 13846419-13846918 Arabidopsis thaliana
AT2G32640 1.0kb upstream 1.0kb upstream 4991 true Chr2: 13846919-13851909 Arabidopsis thaliana
AT2G32640 1.0kb upstream 1.0kb upstream 1000 false Chr2: 13850910-13851909 Arabidopsis thaliana
AT2G32640 1.0kb downstream 1.0kb downstream 4991 true Chr2: 13845919-13850909 Arabidopsis thaliana
AT2G32640 1.0kb downstream 1.0kb downstream 1000 false Chr2: 13845919-13846918 Arabidopsis thaliana
AT2G32640 2.0kb upstream 2.0kb upstream 5991 true Chr2: 13846919-13852909 Arabidopsis thaliana
AT2G32640 2.0kb upstream 2.0kb upstream 2000 false Chr2: 13850910-13852909 Arabidopsis thaliana
AT2G32640 2.0kb downstream 2.0kb downstream 5991 true Chr2: 13844919-13850909 Arabidopsis thaliana
AT2G32640 2.0kb downstream 2.0kb downstream 2000 false Chr2: 13844919-13846918 Arabidopsis thaliana
AT2G32640 5.0kb upstream 5.0kb upstream 8991 true Chr2: 13846919-13855909 Arabidopsis thaliana
AT2G32640 5.0kb upstream 5.0kb upstream 5000 false Chr2: 13850910-13855909 Arabidopsis thaliana
AT2G32640 5.0kb downstream 5.0kb downstream 8991 true Chr2: 13841919-13850909 Arabidopsis thaliana
AT2G32640 5.0kb downstream 5.0kb downstream 5000 false Chr2: 13841919-13846918 Arabidopsis thaliana
AT2G32640 10.0kb upstream 10.0kb upstream 13991 true Chr2: 13846919-13860909 Arabidopsis thaliana
AT2G32640 10.0kb upstream 10.0kb upstream 10000 false Chr2: 13850910-13860909 Arabidopsis thaliana
AT2G32640 10.0kb downstream 10.0kb downstream 13991 true Chr2: 13836919-13850909 Arabidopsis thaliana
AT2G32640 10.0kb downstream 10.0kb downstream 10000 false Chr2: 13836919-13846918 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375141 5261 Brassicaceae View MSA
123829995 5264 Brassicales-Malvales View MSA
124340532 5266 SBM View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.113        
cufflinks 0.388        
cufflinks 4.335        
cufflinks 0.291     Low Low
cufflinks 3.448        
cufflinks 0.372        

0 Strain