Gene : LHCB2.1 A. thaliana TAIR10
Primary Identifier:  ? AT2G05100 Defline:  (1 of 3) K08913 - light-harvesting complex II chlorophyll a/b binding protein 2 (LHCB2)
Genomic Order:  386 Name:  ? AT2G05100
Secondary Identifier:  ? PAC:19638319
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G05100 0.5kb upstream 0.5kb upstream 1686 true Chr2: 1823240-1824925 Arabidopsis thaliana
AT2G05100 0.5kb upstream 0.5kb upstream 500 false Chr2: 1824426-1824925 Arabidopsis thaliana
AT2G05100 0.5kb downstream 0.5kb downstream 1686 true Chr2: 1822740-1824425 Arabidopsis thaliana
AT2G05100 0.5kb downstream 0.5kb downstream 500 false Chr2: 1822740-1823239 Arabidopsis thaliana
AT2G05100 1.0kb upstream 1.0kb upstream 2186 true Chr2: 1823240-1825425 Arabidopsis thaliana
AT2G05100 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1824426-1825425 Arabidopsis thaliana
AT2G05100 1.0kb downstream 1.0kb downstream 2186 true Chr2: 1822240-1824425 Arabidopsis thaliana
AT2G05100 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1822240-1823239 Arabidopsis thaliana
AT2G05100 2.0kb upstream 2.0kb upstream 3186 true Chr2: 1823240-1826425 Arabidopsis thaliana
AT2G05100 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1824426-1826425 Arabidopsis thaliana
AT2G05100 2.0kb downstream 2.0kb downstream 3186 true Chr2: 1821240-1824425 Arabidopsis thaliana
AT2G05100 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1821240-1823239 Arabidopsis thaliana
AT2G05100 5.0kb upstream 5.0kb upstream 6186 true Chr2: 1823240-1829425 Arabidopsis thaliana
AT2G05100 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1824426-1829425 Arabidopsis thaliana
AT2G05100 5.0kb downstream 5.0kb downstream 6186 true Chr2: 1818240-1824425 Arabidopsis thaliana
AT2G05100 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1818240-1823239 Arabidopsis thaliana
AT2G05100 10.0kb upstream 10.0kb upstream 11186 true Chr2: 1823240-1834425 Arabidopsis thaliana
AT2G05100 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1824426-1834425 Arabidopsis thaliana
AT2G05100 10.0kb downstream 10.0kb downstream 11186 true Chr2: 1813240-1824425 Arabidopsis thaliana
AT2G05100 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1813240-1823239 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041019 5273 Angiosperm View MSA
122380433 5261 Brassicaceae View MSA
123832323 5264 Brassicales-Malvales View MSA
124343907 5266 SBM View MSA
124251420 5268 Malvidae View MSA
124062505 5270 Rosid View MSA
123749191 5271 Pentapetalae View MSA
122791500 5272 Eudicot View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 147.571     High  
cufflinks 3.807        
cufflinks 623.241     High  
cufflinks 8.67        
cufflinks 1330.571     High High
cufflinks 1.747       Low

0 Strain