Gene : AT1G75540 A. thaliana TAIR10
Defline:  (1 of 26) PF00643 - B-box zinc finger (zf-B_box) Genomic Order:  6521
Name:  ? AT1G75540 Secondary Identifier:  ? PAC:19655250
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G75540 0.5kb upstream 0.5kb upstream 2126 true Chr1: 28365527-28367652 Arabidopsis thaliana
AT1G75540 0.5kb upstream 0.5kb upstream 500 false Chr1: 28365527-28366026 Arabidopsis thaliana
AT1G75540 0.5kb downstream 0.5kb downstream 2126 true Chr1: 28366027-28368152 Arabidopsis thaliana
AT1G75540 0.5kb downstream 0.5kb downstream 500 false Chr1: 28367653-28368152 Arabidopsis thaliana
AT1G75540 1.0kb upstream 1.0kb upstream 2626 true Chr1: 28365027-28367652 Arabidopsis thaliana
AT1G75540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 28365027-28366026 Arabidopsis thaliana
AT1G75540 1.0kb downstream 1.0kb downstream 2626 true Chr1: 28366027-28368652 Arabidopsis thaliana
AT1G75540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 28367653-28368652 Arabidopsis thaliana
AT1G75540 2.0kb upstream 2.0kb upstream 3626 true Chr1: 28364027-28367652 Arabidopsis thaliana
AT1G75540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 28364027-28366026 Arabidopsis thaliana
AT1G75540 2.0kb downstream 2.0kb downstream 3626 true Chr1: 28366027-28369652 Arabidopsis thaliana
AT1G75540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 28367653-28369652 Arabidopsis thaliana
AT1G75540 5.0kb upstream 5.0kb upstream 6626 true Chr1: 28361027-28367652 Arabidopsis thaliana
AT1G75540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 28361027-28366026 Arabidopsis thaliana
AT1G75540 5.0kb downstream 5.0kb downstream 6626 true Chr1: 28366027-28372652 Arabidopsis thaliana
AT1G75540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 28367653-28372652 Arabidopsis thaliana
AT1G75540 10.0kb upstream 10.0kb upstream 11626 true Chr1: 28356027-28367652 Arabidopsis thaliana
AT1G75540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 28356027-28366026 Arabidopsis thaliana
AT1G75540 10.0kb downstream 10.0kb downstream 11626 true Chr1: 28366027-28377652 Arabidopsis thaliana
AT1G75540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 28367653-28377652 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376418 5261 Brassicaceae View MSA
123830059 5264 Brassicales-Malvales View MSA
124342837 5266 SBM View MSA
124243225 5268 Malvidae View MSA
124065610 5270 Rosid View MSA
123744557 5271 Pentapetalae View MSA
122787512 5272 Eudicot View MSA
122049628 5273 Angiosperm View MSA
121350336 5274 Embryophyte View MSA
123427282 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.291       Low
cufflinks 85.935     High  
cufflinks 13.756        
cufflinks 94.136     High High
cufflinks 12.886        
cufflinks 73.616     High  

0 Strain