Gene : AT1G15170 A. thaliana TAIR10
Defline:  (1 of 14) PTHR11206:SF87 - MATE EFFLUX FAMILY PROTEIN-RELATED Genomic Order:  1524
Name:  ? AT1G15170 Secondary Identifier:  ? PAC:19649415
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15170 0.5kb upstream 0.5kb upstream 2833 true Chr1: 5220141-5222973 Arabidopsis thaliana
AT1G15170 0.5kb upstream 0.5kb upstream 500 false Chr1: 5220141-5220640 Arabidopsis thaliana
AT1G15170 0.5kb downstream 0.5kb downstream 2833 true Chr1: 5220641-5223473 Arabidopsis thaliana
AT1G15170 0.5kb downstream 0.5kb downstream 500 false Chr1: 5222974-5223473 Arabidopsis thaliana
AT1G15170 1.0kb upstream 1.0kb upstream 3333 true Chr1: 5219641-5222973 Arabidopsis thaliana
AT1G15170 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5219641-5220640 Arabidopsis thaliana
AT1G15170 1.0kb downstream 1.0kb downstream 3333 true Chr1: 5220641-5223973 Arabidopsis thaliana
AT1G15170 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5222974-5223973 Arabidopsis thaliana
AT1G15170 2.0kb upstream 2.0kb upstream 4333 true Chr1: 5218641-5222973 Arabidopsis thaliana
AT1G15170 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5218641-5220640 Arabidopsis thaliana
AT1G15170 2.0kb downstream 2.0kb downstream 4333 true Chr1: 5220641-5224973 Arabidopsis thaliana
AT1G15170 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5222974-5224973 Arabidopsis thaliana
AT1G15170 5.0kb upstream 5.0kb upstream 7333 true Chr1: 5215641-5222973 Arabidopsis thaliana
AT1G15170 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5215641-5220640 Arabidopsis thaliana
AT1G15170 5.0kb downstream 5.0kb downstream 7333 true Chr1: 5220641-5227973 Arabidopsis thaliana
AT1G15170 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5222974-5227973 Arabidopsis thaliana
AT1G15170 10.0kb upstream 10.0kb upstream 12333 true Chr1: 5210641-5222973 Arabidopsis thaliana
AT1G15170 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5210641-5220640 Arabidopsis thaliana
AT1G15170 10.0kb downstream 10.0kb downstream 12333 true Chr1: 5220641-5232973 Arabidopsis thaliana
AT1G15170 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5222974-5232973 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379235 5261 Brassicaceae View MSA
123831370 5264 Brassicales-Malvales View MSA
124349930 5266 SBM View MSA
124254486 5268 Malvidae View MSA
124070136 5270 Rosid View MSA
123747121 5271 Pentapetalae View MSA
122794225 5272 Eudicot View MSA
122042479 5273 Angiosperm View MSA
121350842 5274 Embryophyte View MSA
123428088 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.388        
cufflinks 1.933       Low
cufflinks 3.554        
cufflinks 3.068        
cufflinks 3.859       High
cufflinks 2.578        

0 Strain