Gene : scpl44 A. thaliana TAIR10
Primary Identifier:  ? AT1G43780 Defline:  (1 of 4) PTHR11802//PTHR11802:SF63 - SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE // SERINE CARBOXYPEPTIDASE-LIKE 41-RELATED
Genomic Order:  3635 Name:  ? AT1G43780
Secondary Identifier:  ? PAC:19657538
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G43780 0.5kb upstream 0.5kb upstream 4089 true Chr1: 16563311-16567399 Arabidopsis thaliana
AT1G43780 0.5kb upstream 0.5kb upstream 500 false Chr1: 16563311-16563810 Arabidopsis thaliana
AT1G43780 0.5kb downstream 0.5kb downstream 4089 true Chr1: 16563811-16567899 Arabidopsis thaliana
AT1G43780 0.5kb downstream 0.5kb downstream 500 false Chr1: 16567400-16567899 Arabidopsis thaliana
AT1G43780 1.0kb upstream 1.0kb upstream 4589 true Chr1: 16562811-16567399 Arabidopsis thaliana
AT1G43780 1.0kb upstream 1.0kb upstream 1000 false Chr1: 16562811-16563810 Arabidopsis thaliana
AT1G43780 1.0kb downstream 1.0kb downstream 4589 true Chr1: 16563811-16568399 Arabidopsis thaliana
AT1G43780 1.0kb downstream 1.0kb downstream 1000 false Chr1: 16567400-16568399 Arabidopsis thaliana
AT1G43780 2.0kb upstream 2.0kb upstream 5589 true Chr1: 16561811-16567399 Arabidopsis thaliana
AT1G43780 2.0kb upstream 2.0kb upstream 2000 false Chr1: 16561811-16563810 Arabidopsis thaliana
AT1G43780 2.0kb downstream 2.0kb downstream 5589 true Chr1: 16563811-16569399 Arabidopsis thaliana
AT1G43780 2.0kb downstream 2.0kb downstream 2000 false Chr1: 16567400-16569399 Arabidopsis thaliana
AT1G43780 5.0kb upstream 5.0kb upstream 8589 true Chr1: 16558811-16567399 Arabidopsis thaliana
AT1G43780 5.0kb upstream 5.0kb upstream 5000 false Chr1: 16558811-16563810 Arabidopsis thaliana
AT1G43780 5.0kb downstream 5.0kb downstream 8589 true Chr1: 16563811-16572399 Arabidopsis thaliana
AT1G43780 5.0kb downstream 5.0kb downstream 5000 false Chr1: 16567400-16572399 Arabidopsis thaliana
AT1G43780 10.0kb upstream 10.0kb upstream 13589 true Chr1: 16553811-16567399 Arabidopsis thaliana
AT1G43780 10.0kb upstream 10.0kb upstream 10000 false Chr1: 16553811-16563810 Arabidopsis thaliana
AT1G43780 10.0kb downstream 10.0kb downstream 13589 true Chr1: 16563811-16577399 Arabidopsis thaliana
AT1G43780 10.0kb downstream 10.0kb downstream 10000 false Chr1: 16567400-16577399 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367559 5261 Brassicaceae View MSA
123838753 5264 Brassicales-Malvales View MSA
124344444 5266 SBM View MSA
124246274 5268 Malvidae View MSA
124061413 5270 Rosid View MSA
123737952 5271 Pentapetalae View MSA
122791491 5272 Eudicot View MSA
122043115 5273 Angiosperm View MSA
121351274 5274 Embryophyte View MSA
123428424 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain