Gene : AT1G52820 A. thaliana TAIR10
Defline:  (1 of 5) PTHR10209:SF211 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED Genomic Order:  4314
Name:  ? AT1G52820 Secondary Identifier:  ? PAC:19655819
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52820 0.5kb upstream 0.5kb upstream 1745 true Chr1: 19668683-19670427 Arabidopsis thaliana
AT1G52820 0.5kb upstream 0.5kb upstream 500 false Chr1: 19668683-19669182 Arabidopsis thaliana
AT1G52820 0.5kb downstream 0.5kb downstream 1745 true Chr1: 19669183-19670927 Arabidopsis thaliana
AT1G52820 0.5kb downstream 0.5kb downstream 500 false Chr1: 19670428-19670927 Arabidopsis thaliana
AT1G52820 1.0kb upstream 1.0kb upstream 2245 true Chr1: 19668183-19670427 Arabidopsis thaliana
AT1G52820 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19668183-19669182 Arabidopsis thaliana
AT1G52820 1.0kb downstream 1.0kb downstream 2245 true Chr1: 19669183-19671427 Arabidopsis thaliana
AT1G52820 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19670428-19671427 Arabidopsis thaliana
AT1G52820 2.0kb upstream 2.0kb upstream 3245 true Chr1: 19667183-19670427 Arabidopsis thaliana
AT1G52820 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19667183-19669182 Arabidopsis thaliana
AT1G52820 2.0kb downstream 2.0kb downstream 3245 true Chr1: 19669183-19672427 Arabidopsis thaliana
AT1G52820 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19670428-19672427 Arabidopsis thaliana
AT1G52820 5.0kb upstream 5.0kb upstream 6245 true Chr1: 19664183-19670427 Arabidopsis thaliana
AT1G52820 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19664183-19669182 Arabidopsis thaliana
AT1G52820 5.0kb downstream 5.0kb downstream 6245 true Chr1: 19669183-19675427 Arabidopsis thaliana
AT1G52820 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19670428-19675427 Arabidopsis thaliana
AT1G52820 10.0kb upstream 10.0kb upstream 11245 true Chr1: 19659183-19670427 Arabidopsis thaliana
AT1G52820 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19659183-19669182 Arabidopsis thaliana
AT1G52820 10.0kb downstream 10.0kb downstream 11245 true Chr1: 19669183-19680427 Arabidopsis thaliana
AT1G52820 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19670428-19680427 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379001 5261 Brassicaceae View MSA
123832942 5264 Brassicales-Malvales View MSA
124345931 5266 SBM View MSA
124247987 5268 Malvidae View MSA
124071361 5270 Rosid View MSA
123745287 5271 Pentapetalae View MSA
122794862 5272 Eudicot View MSA
122049983 5273 Angiosperm View MSA
121351824 5274 Embryophyte View MSA
123382352 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.024     Low Low
cufflinks 5.469        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 15.835        
cufflinks 0.052     Low  
cufflinks 16.836        

0 Strain