Gene : AT1G29800 A. thaliana TAIR10
Defline:  (1 of 1) PTHR15629//PTHR15629:SF9 - SH3YL1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2944
Name:  ? AT1G29800 Secondary Identifier:  ? PAC:19656229
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G29800 0.5kb upstream 0.5kb upstream 3341 true Chr1: 10432101-10435441 Arabidopsis thaliana
AT1G29800 0.5kb upstream 0.5kb upstream 500 false Chr1: 10432101-10432600 Arabidopsis thaliana
AT1G29800 0.5kb downstream 0.5kb downstream 3341 true Chr1: 10432601-10435941 Arabidopsis thaliana
AT1G29800 0.5kb downstream 0.5kb downstream 500 false Chr1: 10435442-10435941 Arabidopsis thaliana
AT1G29800 1.0kb upstream 1.0kb upstream 3841 true Chr1: 10431601-10435441 Arabidopsis thaliana
AT1G29800 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10431601-10432600 Arabidopsis thaliana
AT1G29800 1.0kb downstream 1.0kb downstream 3841 true Chr1: 10432601-10436441 Arabidopsis thaliana
AT1G29800 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10435442-10436441 Arabidopsis thaliana
AT1G29800 2.0kb upstream 2.0kb upstream 4841 true Chr1: 10430601-10435441 Arabidopsis thaliana
AT1G29800 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10430601-10432600 Arabidopsis thaliana
AT1G29800 2.0kb downstream 2.0kb downstream 4841 true Chr1: 10432601-10437441 Arabidopsis thaliana
AT1G29800 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10435442-10437441 Arabidopsis thaliana
AT1G29800 5.0kb upstream 5.0kb upstream 7841 true Chr1: 10427601-10435441 Arabidopsis thaliana
AT1G29800 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10427601-10432600 Arabidopsis thaliana
AT1G29800 5.0kb downstream 5.0kb downstream 7841 true Chr1: 10432601-10440441 Arabidopsis thaliana
AT1G29800 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10435442-10440441 Arabidopsis thaliana
AT1G29800 10.0kb upstream 10.0kb upstream 12841 true Chr1: 10422601-10435441 Arabidopsis thaliana
AT1G29800 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10422601-10432600 Arabidopsis thaliana
AT1G29800 10.0kb downstream 10.0kb downstream 12841 true Chr1: 10432601-10445441 Arabidopsis thaliana
AT1G29800 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10435442-10445441 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373768 5261 Brassicaceae View MSA
123834155 5264 Brassicales-Malvales View MSA
124339977 5266 SBM View MSA
124237093 5268 Malvidae View MSA
124073476 5270 Rosid View MSA
123736905 5271 Pentapetalae View MSA
122785686 5272 Eudicot View MSA
122047876 5273 Angiosperm View MSA
121349418 5274 Embryophyte View MSA
123426176 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.583       High
cufflinks 2.38       Low
cufflinks 2.574        
cufflinks 2.92        
cufflinks 2.895        
cufflinks 2.771        

0 Strain