Gene : CAB3 A. thaliana TAIR10
Primary Identifier:  ? AT1G29910 Defline:  (1 of 5) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1)
Genomic Order:  2955 Name:  ? AT1G29910
Secondary Identifier:  ? PAC:19655546
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0 Pathways

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G29910 0.5kb upstream 0.5kb upstream 1520 true Chr1: 10472280-10473799 Arabidopsis thaliana
AT1G29910 0.5kb upstream 0.5kb upstream 500 false Chr1: 10473300-10473799 Arabidopsis thaliana
AT1G29910 0.5kb downstream 0.5kb downstream 1520 true Chr1: 10471780-10473299 Arabidopsis thaliana
AT1G29910 0.5kb downstream 0.5kb downstream 500 false Chr1: 10471780-10472279 Arabidopsis thaliana
AT1G29910 1.0kb upstream 1.0kb upstream 2020 true Chr1: 10472280-10474299 Arabidopsis thaliana
AT1G29910 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10473300-10474299 Arabidopsis thaliana
AT1G29910 1.0kb downstream 1.0kb downstream 2020 true Chr1: 10471280-10473299 Arabidopsis thaliana
AT1G29910 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10471280-10472279 Arabidopsis thaliana
AT1G29910 2.0kb upstream 2.0kb upstream 3020 true Chr1: 10472280-10475299 Arabidopsis thaliana
AT1G29910 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10473300-10475299 Arabidopsis thaliana
AT1G29910 2.0kb downstream 2.0kb downstream 3020 true Chr1: 10470280-10473299 Arabidopsis thaliana
AT1G29910 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10470280-10472279 Arabidopsis thaliana
AT1G29910 5.0kb upstream 5.0kb upstream 6020 true Chr1: 10472280-10478299 Arabidopsis thaliana
AT1G29910 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10473300-10478299 Arabidopsis thaliana
AT1G29910 5.0kb downstream 5.0kb downstream 6020 true Chr1: 10467280-10473299 Arabidopsis thaliana
AT1G29910 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10467280-10472279 Arabidopsis thaliana
AT1G29910 10.0kb upstream 10.0kb upstream 11020 true Chr1: 10472280-10483299 Arabidopsis thaliana
AT1G29910 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10473300-10483299 Arabidopsis thaliana
AT1G29910 10.0kb downstream 10.0kb downstream 11020 true Chr1: 10462280-10473299 Arabidopsis thaliana
AT1G29910 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10462280-10472279 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379914 5261 Brassicaceae View MSA
123837903 5264 Brassicales-Malvales View MSA
124347417 5266 SBM View MSA
124244902 5268 Malvidae View MSA
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 802.108     High  
cufflinks 0.626       Low
cufflinks 3803.211     High High
cufflinks 1.585        
cufflinks 4475.514     High High
cufflinks 1.305        

0 Strain