Gene : MSL6 A. thaliana TAIR10
Primary Identifier:  ? AT1G78610 Defline:  (1 of 3) PTHR31618//PTHR31618:SF1 - FAMILY NOT NAMED // MECHANOSENSITIVE ION CHANNEL PROTEIN 6-RELATED
Genomic Order:  6835 Name:  ? AT1G78610
Secondary Identifier:  ? PAC:19653850
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78610 0.5kb upstream 0.5kb upstream 3597 true Chr1: 29569030-29572626 Arabidopsis thaliana
AT1G78610 0.5kb upstream 0.5kb upstream 500 false Chr1: 29572127-29572626 Arabidopsis thaliana
AT1G78610 0.5kb downstream 0.5kb downstream 3597 true Chr1: 29568530-29572126 Arabidopsis thaliana
AT1G78610 0.5kb downstream 0.5kb downstream 500 false Chr1: 29568530-29569029 Arabidopsis thaliana
AT1G78610 1.0kb upstream 1.0kb upstream 4097 true Chr1: 29569030-29573126 Arabidopsis thaliana
AT1G78610 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29572127-29573126 Arabidopsis thaliana
AT1G78610 1.0kb downstream 1.0kb downstream 4097 true Chr1: 29568030-29572126 Arabidopsis thaliana
AT1G78610 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29568030-29569029 Arabidopsis thaliana
AT1G78610 2.0kb upstream 2.0kb upstream 5097 true Chr1: 29569030-29574126 Arabidopsis thaliana
AT1G78610 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29572127-29574126 Arabidopsis thaliana
AT1G78610 2.0kb downstream 2.0kb downstream 5097 true Chr1: 29567030-29572126 Arabidopsis thaliana
AT1G78610 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29567030-29569029 Arabidopsis thaliana
AT1G78610 5.0kb upstream 5.0kb upstream 8097 true Chr1: 29569030-29577126 Arabidopsis thaliana
AT1G78610 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29572127-29577126 Arabidopsis thaliana
AT1G78610 5.0kb downstream 5.0kb downstream 8097 true Chr1: 29564030-29572126 Arabidopsis thaliana
AT1G78610 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29564030-29569029 Arabidopsis thaliana
AT1G78610 10.0kb upstream 10.0kb upstream 13097 true Chr1: 29569030-29582126 Arabidopsis thaliana
AT1G78610 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29572127-29582126 Arabidopsis thaliana
AT1G78610 10.0kb downstream 10.0kb downstream 13097 true Chr1: 29559030-29572126 Arabidopsis thaliana
AT1G78610 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29559030-29569029 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371582 5261 Brassicaceae View MSA
123833519 5264 Brassicales-Malvales View MSA
124350910 5266 SBM View MSA
124253835 5268 Malvidae View MSA
124068168 5270 Rosid View MSA
123745809 5271 Pentapetalae View MSA
122795005 5272 Eudicot View MSA
122045304 5273 Angiosperm View MSA
121348130 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.781       High
cufflinks 6.873       Low
cufflinks 10.498        
cufflinks 12.904        
cufflinks 10.005        
cufflinks 7.959        

0 Strain