Gene : AT1G80150 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  6992
Name:  ? AT1G80150 Secondary Identifier:  ? PAC:19651987
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G80150 0.5kb upstream 0.5kb upstream 2630 true Chr1: 30147888-30150517 Arabidopsis thaliana
AT1G80150 0.5kb upstream 0.5kb upstream 500 false Chr1: 30147888-30148387 Arabidopsis thaliana
AT1G80150 0.5kb downstream 0.5kb downstream 2630 true Chr1: 30148388-30151017 Arabidopsis thaliana
AT1G80150 0.5kb downstream 0.5kb downstream 500 false Chr1: 30150518-30151017 Arabidopsis thaliana
AT1G80150 1.0kb upstream 1.0kb upstream 3130 true Chr1: 30147388-30150517 Arabidopsis thaliana
AT1G80150 1.0kb upstream 1.0kb upstream 1000 false Chr1: 30147388-30148387 Arabidopsis thaliana
AT1G80150 1.0kb downstream 1.0kb downstream 3130 true Chr1: 30148388-30151517 Arabidopsis thaliana
AT1G80150 1.0kb downstream 1.0kb downstream 1000 false Chr1: 30150518-30151517 Arabidopsis thaliana
AT1G80150 2.0kb upstream 2.0kb upstream 4130 true Chr1: 30146388-30150517 Arabidopsis thaliana
AT1G80150 2.0kb upstream 2.0kb upstream 2000 false Chr1: 30146388-30148387 Arabidopsis thaliana
AT1G80150 2.0kb downstream 2.0kb downstream 4130 true Chr1: 30148388-30152517 Arabidopsis thaliana
AT1G80150 2.0kb downstream 2.0kb downstream 2000 false Chr1: 30150518-30152517 Arabidopsis thaliana
AT1G80150 5.0kb upstream 5.0kb upstream 7130 true Chr1: 30143388-30150517 Arabidopsis thaliana
AT1G80150 5.0kb upstream 5.0kb upstream 5000 false Chr1: 30143388-30148387 Arabidopsis thaliana
AT1G80150 5.0kb downstream 5.0kb downstream 7130 true Chr1: 30148388-30155517 Arabidopsis thaliana
AT1G80150 5.0kb downstream 5.0kb downstream 5000 false Chr1: 30150518-30155517 Arabidopsis thaliana
AT1G80150 10.0kb upstream 10.0kb upstream 12130 true Chr1: 30138388-30150517 Arabidopsis thaliana
AT1G80150 10.0kb upstream 10.0kb upstream 10000 false Chr1: 30138388-30148387 Arabidopsis thaliana
AT1G80150 10.0kb downstream 10.0kb downstream 12130 true Chr1: 30148388-30160517 Arabidopsis thaliana
AT1G80150 10.0kb downstream 10.0kb downstream 10000 false Chr1: 30150518-30160517 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368917 5261 Brassicaceae View MSA
123833801 5264 Brassicales-Malvales View MSA
124339836 5266 SBM View MSA
124242471 5268 Malvidae View MSA
124063725 5270 Rosid View MSA
123743446 5271 Pentapetalae View MSA
122788248 5272 Eudicot View MSA
122047755 5273 Angiosperm View MSA
121310787 5274 Embryophyte View MSA
123348188 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.663        
cufflinks 4.562        
cufflinks 3.256       Low
cufflinks 4.706        
cufflinks 3.085       Low
cufflinks 4.701        

0 Strain