Gene : AT1G54217 A. thaliana TAIR10
Defline:  (1 of 10) PTHR10052 - 60S RIBOSOMAL PROTEIN L18A Genomic Order:  4476
Name:  ? AT1G54217 Secondary Identifier:  ? PAC:19651582
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54217 0.5kb upstream 0.5kb upstream 2107 true Chr1: 20243921-20246027 Arabidopsis thaliana
AT1G54217 0.5kb upstream 0.5kb upstream 500 false Chr1: 20245528-20246027 Arabidopsis thaliana
AT1G54217 0.5kb downstream 0.5kb downstream 2107 true Chr1: 20243421-20245527 Arabidopsis thaliana
AT1G54217 0.5kb downstream 0.5kb downstream 500 false Chr1: 20243421-20243920 Arabidopsis thaliana
AT1G54217 1.0kb upstream 1.0kb upstream 2607 true Chr1: 20243921-20246527 Arabidopsis thaliana
AT1G54217 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20245528-20246527 Arabidopsis thaliana
AT1G54217 1.0kb downstream 1.0kb downstream 2607 true Chr1: 20242921-20245527 Arabidopsis thaliana
AT1G54217 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20242921-20243920 Arabidopsis thaliana
AT1G54217 2.0kb upstream 2.0kb upstream 3607 true Chr1: 20243921-20247527 Arabidopsis thaliana
AT1G54217 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20245528-20247527 Arabidopsis thaliana
AT1G54217 2.0kb downstream 2.0kb downstream 3607 true Chr1: 20241921-20245527 Arabidopsis thaliana
AT1G54217 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20241921-20243920 Arabidopsis thaliana
AT1G54217 5.0kb upstream 5.0kb upstream 6607 true Chr1: 20243921-20250527 Arabidopsis thaliana
AT1G54217 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20245528-20250527 Arabidopsis thaliana
AT1G54217 5.0kb downstream 5.0kb downstream 6607 true Chr1: 20238921-20245527 Arabidopsis thaliana
AT1G54217 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20238921-20243920 Arabidopsis thaliana
AT1G54217 10.0kb upstream 10.0kb upstream 11607 true Chr1: 20243921-20255527 Arabidopsis thaliana
AT1G54217 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20245528-20255527 Arabidopsis thaliana
AT1G54217 10.0kb downstream 10.0kb downstream 11607 true Chr1: 20233921-20245527 Arabidopsis thaliana
AT1G54217 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20233921-20243920 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027441 5273 Angiosperm View MSA
122367123 5261 Brassicaceae View MSA
123841516 5264 Brassicales-Malvales View MSA
124348801 5266 SBM View MSA
124247550 5268 Malvidae View MSA
124063459 5270 Rosid View MSA
123745455 5271 Pentapetalae View MSA
122796236 5272 Eudicot View MSA
121350597 5274 Embryophyte View MSA
123425775 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.504       Low
cufflinks 3.68        
cufflinks 1.851        
cufflinks 2.967        
cufflinks 1.329        
cufflinks 2.922        

0 Strain