Gene : AHG2 A. thaliana TAIR10
Primary Identifier:  ? AT1G55870 Defline:  (1 of 1) PTHR15092//PTHR15092:SF22 - POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 // TARGET OF EGR1 PROTEIN 1
Genomic Order:  4645 Name:  ? AT1G55870
Secondary Identifier:  ? PAC:19653008
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G55870 0.5kb upstream 0.5kb upstream 3338 true Chr1: 20895085-20898422 Arabidopsis thaliana
AT1G55870 0.5kb upstream 0.5kb upstream 500 false Chr1: 20895085-20895584 Arabidopsis thaliana
AT1G55870 0.5kb downstream 0.5kb downstream 3338 true Chr1: 20895585-20898922 Arabidopsis thaliana
AT1G55870 0.5kb downstream 0.5kb downstream 500 false Chr1: 20898423-20898922 Arabidopsis thaliana
AT1G55870 1.0kb upstream 1.0kb upstream 3838 true Chr1: 20894585-20898422 Arabidopsis thaliana
AT1G55870 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20894585-20895584 Arabidopsis thaliana
AT1G55870 1.0kb downstream 1.0kb downstream 3838 true Chr1: 20895585-20899422 Arabidopsis thaliana
AT1G55870 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20898423-20899422 Arabidopsis thaliana
AT1G55870 2.0kb upstream 2.0kb upstream 4838 true Chr1: 20893585-20898422 Arabidopsis thaliana
AT1G55870 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20893585-20895584 Arabidopsis thaliana
AT1G55870 2.0kb downstream 2.0kb downstream 4838 true Chr1: 20895585-20900422 Arabidopsis thaliana
AT1G55870 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20898423-20900422 Arabidopsis thaliana
AT1G55870 5.0kb upstream 5.0kb upstream 7838 true Chr1: 20890585-20898422 Arabidopsis thaliana
AT1G55870 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20890585-20895584 Arabidopsis thaliana
AT1G55870 5.0kb downstream 5.0kb downstream 7838 true Chr1: 20895585-20903422 Arabidopsis thaliana
AT1G55870 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20898423-20903422 Arabidopsis thaliana
AT1G55870 10.0kb upstream 10.0kb upstream 12838 true Chr1: 20885585-20898422 Arabidopsis thaliana
AT1G55870 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20885585-20895584 Arabidopsis thaliana
AT1G55870 10.0kb downstream 10.0kb downstream 12838 true Chr1: 20895585-20908422 Arabidopsis thaliana
AT1G55870 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20898423-20908422 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372542 5261 Brassicaceae View MSA
123829148 5264 Brassicales-Malvales View MSA
124341658 5266 SBM View MSA
124236859 5268 Malvidae View MSA
124073330 5270 Rosid View MSA
123738401 5271 Pentapetalae View MSA
122796847 5272 Eudicot View MSA
122041531 5273 Angiosperm View MSA
121345225 5274 Embryophyte View MSA
123427620 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.609        
cufflinks 2.665        
cufflinks 1.6        
cufflinks 3.012       High
cufflinks 1.549        
cufflinks 2.526        

0 Strain