Gene : AT1G56140 A. thaliana TAIR10

Defline:  (1 of 4) PTHR27006//PTHR27006:SF44 - FAMILY NOT NAMED // LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE Genomic Order:  4676
Name:  ? AT1G56140 Secondary Identifier:  ? PAC:19654726

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G56140 0.5kb upstream 0.5kb upstream 6736 true Chr1: 21001574-21008309 Arabidopsis thaliana
AT1G56140 0.5kb upstream 0.5kb upstream 500 false Chr1: 21007810-21008309 Arabidopsis thaliana
AT1G56140 0.5kb downstream 0.5kb downstream 6736 true Chr1: 21001074-21007809 Arabidopsis thaliana
AT1G56140 0.5kb downstream 0.5kb downstream 500 false Chr1: 21001074-21001573 Arabidopsis thaliana
AT1G56140 1.0kb upstream 1.0kb upstream 7236 true Chr1: 21001574-21008809 Arabidopsis thaliana
AT1G56140 1.0kb upstream 1.0kb upstream 1000 false Chr1: 21007810-21008809 Arabidopsis thaliana
AT1G56140 1.0kb downstream 1.0kb downstream 7236 true Chr1: 21000574-21007809 Arabidopsis thaliana
AT1G56140 1.0kb downstream 1.0kb downstream 1000 false Chr1: 21000574-21001573 Arabidopsis thaliana
AT1G56140 2.0kb upstream 2.0kb upstream 8236 true Chr1: 21001574-21009809 Arabidopsis thaliana
AT1G56140 2.0kb upstream 2.0kb upstream 2000 false Chr1: 21007810-21009809 Arabidopsis thaliana
AT1G56140 2.0kb downstream 2.0kb downstream 8236 true Chr1: 20999574-21007809 Arabidopsis thaliana
AT1G56140 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20999574-21001573 Arabidopsis thaliana
AT1G56140 5.0kb upstream 5.0kb upstream 11236 true Chr1: 21001574-21012809 Arabidopsis thaliana
AT1G56140 5.0kb upstream 5.0kb upstream 5000 false Chr1: 21007810-21012809 Arabidopsis thaliana
AT1G56140 5.0kb downstream 5.0kb downstream 11236 true Chr1: 20996574-21007809 Arabidopsis thaliana
AT1G56140 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20996574-21001573 Arabidopsis thaliana
AT1G56140 10.0kb upstream 10.0kb upstream 16236 true Chr1: 21001574-21017809 Arabidopsis thaliana
AT1G56140 10.0kb upstream 10.0kb upstream 10000 false Chr1: 21007810-21017809 Arabidopsis thaliana
AT1G56140 10.0kb downstream 10.0kb downstream 16236 true Chr1: 20991574-21007809 Arabidopsis thaliana
AT1G56140 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20991574-21001573 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379993 5261 Brassicaceae View MSA
123838045 5264 Brassicales-Malvales View MSA
124344424 5266 SBM View MSA
124245862 5268 Malvidae View MSA
124072019 5270 Rosid View MSA
123750950 5271 Pentapetalae View MSA
122793307 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.898        
cufflinks 19.792       High
cufflinks 2.872       Low
cufflinks 15.096        
cufflinks 3.247        
cufflinks 15.234        

0 Strain