Gene : SK42 A. thaliana TAIR10
Primary Identifier:  ? AT1G57870 Defline:  (1 of 2) PTHR24057:SF3 - SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED
Genomic Order:  4771 Name:  ? AT1G57870
Secondary Identifier:  ? PAC:19651075
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G57870 0.5kb upstream 0.5kb upstream 5553 true Chr1: 21431051-21436603 Arabidopsis thaliana
AT1G57870 0.5kb upstream 0.5kb upstream 500 false Chr1: 21436104-21436603 Arabidopsis thaliana
AT1G57870 0.5kb downstream 0.5kb downstream 5553 true Chr1: 21430551-21436103 Arabidopsis thaliana
AT1G57870 0.5kb downstream 0.5kb downstream 500 false Chr1: 21430551-21431050 Arabidopsis thaliana
AT1G57870 1.0kb upstream 1.0kb upstream 6053 true Chr1: 21431051-21437103 Arabidopsis thaliana
AT1G57870 1.0kb upstream 1.0kb upstream 1000 false Chr1: 21436104-21437103 Arabidopsis thaliana
AT1G57870 1.0kb downstream 1.0kb downstream 6053 true Chr1: 21430051-21436103 Arabidopsis thaliana
AT1G57870 1.0kb downstream 1.0kb downstream 1000 false Chr1: 21430051-21431050 Arabidopsis thaliana
AT1G57870 2.0kb upstream 2.0kb upstream 7053 true Chr1: 21431051-21438103 Arabidopsis thaliana
AT1G57870 2.0kb upstream 2.0kb upstream 2000 false Chr1: 21436104-21438103 Arabidopsis thaliana
AT1G57870 2.0kb downstream 2.0kb downstream 7053 true Chr1: 21429051-21436103 Arabidopsis thaliana
AT1G57870 2.0kb downstream 2.0kb downstream 2000 false Chr1: 21429051-21431050 Arabidopsis thaliana
AT1G57870 5.0kb upstream 5.0kb upstream 10053 true Chr1: 21431051-21441103 Arabidopsis thaliana
AT1G57870 5.0kb upstream 5.0kb upstream 5000 false Chr1: 21436104-21441103 Arabidopsis thaliana
AT1G57870 5.0kb downstream 5.0kb downstream 10053 true Chr1: 21426051-21436103 Arabidopsis thaliana
AT1G57870 5.0kb downstream 5.0kb downstream 5000 false Chr1: 21426051-21431050 Arabidopsis thaliana
AT1G57870 10.0kb upstream 10.0kb upstream 15053 true Chr1: 21431051-21446103 Arabidopsis thaliana
AT1G57870 10.0kb upstream 10.0kb upstream 10000 false Chr1: 21436104-21446103 Arabidopsis thaliana
AT1G57870 10.0kb downstream 10.0kb downstream 15053 true Chr1: 21421051-21436103 Arabidopsis thaliana
AT1G57870 10.0kb downstream 10.0kb downstream 10000 false Chr1: 21421051-21431050 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376970 5261 Brassicaceae View MSA
123836962 5264 Brassicales-Malvales View MSA
124339049 5266 SBM View MSA
124246964 5268 Malvidae View MSA
124062280 5270 Rosid View MSA
123738232 5271 Pentapetalae View MSA
122769916 5272 Eudicot View MSA
122046195 5273 Angiosperm View MSA
121310573 5274 Embryophyte View MSA
123427870 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.263        
cufflinks 3.316        
cufflinks 3.1        
cufflinks 3.124        
cufflinks 3.383       High
cufflinks 3.077       Low

0 Strain