Gene : UBC20 A. thaliana TAIR10
Primary Identifier:  ? AT1G50490 Defline:  (1 of 1) PTHR24067//PTHR24067:SF121 - UBIQUITIN-CONJUGATING ENZYME E2 // SUBFAMILY NOT NAMED
Genomic Order:  4071 Name:  ? AT1G50490
Secondary Identifier:  ? PAC:19654620
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50490 0.5kb upstream 0.5kb upstream 2174 true Chr1: 18704805-18706978 Arabidopsis thaliana
AT1G50490 0.5kb upstream 0.5kb upstream 500 false Chr1: 18706479-18706978 Arabidopsis thaliana
AT1G50490 0.5kb downstream 0.5kb downstream 2174 true Chr1: 18704305-18706478 Arabidopsis thaliana
AT1G50490 0.5kb downstream 0.5kb downstream 500 false Chr1: 18704305-18704804 Arabidopsis thaliana
AT1G50490 1.0kb upstream 1.0kb upstream 2674 true Chr1: 18704805-18707478 Arabidopsis thaliana
AT1G50490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18706479-18707478 Arabidopsis thaliana
AT1G50490 1.0kb downstream 1.0kb downstream 2674 true Chr1: 18703805-18706478 Arabidopsis thaliana
AT1G50490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18703805-18704804 Arabidopsis thaliana
AT1G50490 2.0kb upstream 2.0kb upstream 3674 true Chr1: 18704805-18708478 Arabidopsis thaliana
AT1G50490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18706479-18708478 Arabidopsis thaliana
AT1G50490 2.0kb downstream 2.0kb downstream 3674 true Chr1: 18702805-18706478 Arabidopsis thaliana
AT1G50490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18702805-18704804 Arabidopsis thaliana
AT1G50490 5.0kb upstream 5.0kb upstream 6674 true Chr1: 18704805-18711478 Arabidopsis thaliana
AT1G50490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18706479-18711478 Arabidopsis thaliana
AT1G50490 5.0kb downstream 5.0kb downstream 6674 true Chr1: 18699805-18706478 Arabidopsis thaliana
AT1G50490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18699805-18704804 Arabidopsis thaliana
AT1G50490 10.0kb upstream 10.0kb upstream 11674 true Chr1: 18704805-18716478 Arabidopsis thaliana
AT1G50490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18706479-18716478 Arabidopsis thaliana
AT1G50490 10.0kb downstream 10.0kb downstream 11674 true Chr1: 18694805-18706478 Arabidopsis thaliana
AT1G50490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18694805-18704804 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378746 5261 Brassicaceae View MSA
123838520 5264 Brassicales-Malvales View MSA
124340055 5266 SBM View MSA
124250990 5268 Malvidae View MSA
124064944 5270 Rosid View MSA
123741729 5271 Pentapetalae View MSA
122792532 5272 Eudicot View MSA
122046674 5273 Angiosperm View MSA
121349130 5274 Embryophyte View MSA
123424862 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.876        
cufflinks 33.338     High  
cufflinks 7.222        
cufflinks 28.239        
cufflinks 4.204       Low
cufflinks 49.132     High High

0 Strain