Gene : AT1G53440 A. thaliana TAIR10
Defline:  (1 of 16) PF07714//PF11721 - Protein tyrosine kinase (Pkinase_Tyr) // Di-glucose binding within endoplasmic reticulum (Malectin) Genomic Order:  4385
Name:  ? AT1G53440 Secondary Identifier:  ? PAC:19655026
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53440 0.5kb upstream 0.5kb upstream 6104 true Chr1: 19945459-19951562 Arabidopsis thaliana
AT1G53440 0.5kb upstream 0.5kb upstream 500 false Chr1: 19945459-19945958 Arabidopsis thaliana
AT1G53440 0.5kb downstream 0.5kb downstream 6104 true Chr1: 19945959-19952062 Arabidopsis thaliana
AT1G53440 0.5kb downstream 0.5kb downstream 500 false Chr1: 19951563-19952062 Arabidopsis thaliana
AT1G53440 1.0kb upstream 1.0kb upstream 6604 true Chr1: 19944959-19951562 Arabidopsis thaliana
AT1G53440 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19944959-19945958 Arabidopsis thaliana
AT1G53440 1.0kb downstream 1.0kb downstream 6604 true Chr1: 19945959-19952562 Arabidopsis thaliana
AT1G53440 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19951563-19952562 Arabidopsis thaliana
AT1G53440 2.0kb upstream 2.0kb upstream 7604 true Chr1: 19943959-19951562 Arabidopsis thaliana
AT1G53440 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19943959-19945958 Arabidopsis thaliana
AT1G53440 2.0kb downstream 2.0kb downstream 7604 true Chr1: 19945959-19953562 Arabidopsis thaliana
AT1G53440 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19951563-19953562 Arabidopsis thaliana
AT1G53440 5.0kb upstream 5.0kb upstream 10604 true Chr1: 19940959-19951562 Arabidopsis thaliana
AT1G53440 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19940959-19945958 Arabidopsis thaliana
AT1G53440 5.0kb downstream 5.0kb downstream 10604 true Chr1: 19945959-19956562 Arabidopsis thaliana
AT1G53440 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19951563-19956562 Arabidopsis thaliana
AT1G53440 10.0kb upstream 10.0kb upstream 15604 true Chr1: 19935959-19951562 Arabidopsis thaliana
AT1G53440 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19935959-19945958 Arabidopsis thaliana
AT1G53440 10.0kb downstream 10.0kb downstream 15604 true Chr1: 19945959-19961562 Arabidopsis thaliana
AT1G53440 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19951563-19961562 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331755 5261 Brassicaceae View MSA
123836625 5264 Brassicales-Malvales View MSA
124343892 5266 SBM View MSA
124239935 5268 Malvidae View MSA
124063335 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.089        
cufflinks 30.494     High High
cufflinks 14.918       Low
cufflinks 23.857        
cufflinks 18.366        
cufflinks 21.823        

0 Strain